Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01839 ATGGCCGCAAGCCGGACTGTGTTGCGTTCTGCGACAATATTCTTAACGGAGCCATCGCGGCCCGTTCTCGTTGGCCGTGCTTCTTCCTCCTTCTCGCTCGGAACCAGGCGAACGTTCACTCACAGATTGTATTGCATTTCGTGGAACACTAGGGCTCGAGGATTTCTCTTTCCGAAACGAACTGTTCTGACTTGCTCCTACGATGAAACTCAATCGACGTCGTCGTCTAATCAGGACGACCAGGGCCCTCCTCAGGAGGCTGTTTTGAAGGCAATTTCAGAGGTATCCAAGACAGAAGGGAGGGTTGGCCATACTACAAATATGGTACTTGGAGGAACAGTGACTGATGATTCTTCCAATGAGTGGATCGCTTTGGATCAAAAGGTGAACTCGTACCCGGGCGTTAGAGGTTTTACGGCAATTGGAACTGGGGGAGATGATTTTGTGCAGTCTATGGTTGTTGCTGTGGAGTCTGTCCTCCAAAAGCCAATTCCTGAGGGCAAGGTGAGGCATAAATTATCGGCAAAAGGGAAGTACGTCTCAGTAAACATAGGACCAGTTCAAGTAATTTCCAGTGAGCAGGTTCAAGCCGTGTACAACGCAATGAAGAGAGATGACCGTATGAAATACTTTCTATAG 639 48.67 MAASRTVLRSATIFLTEPSRPVLVGRASSSFSLGTRRTFTHRLYCISWNTRARGFLFPKRTVLTCSYDETQSTSSSNQDDQGPPQEAVLKAISEVSKTEGRVGHTTNMVLGGTVTDDSSNEWIALDQKVNSYPGVRGFTAIGTGGDDFVQSMVVAVESVLQKPIPEGKVRHKLSAKGKYVSVNIGPVQVISSEQVQAVYNAMKRDDRMKYFL 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9269919 9275075 + CmaCh04G018390.1 Cma04g01839 292920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01839 212 SUPERFAMILY YbeD/HP0495-like 127 212 IPR027471 -
Cma04g01839 212 PANTHER PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE 3 212 - -
Cma04g01839 212 Gene3D - 126 212 - -
Cma04g01839 212 Pfam Protein of unknown function (DUF493) 129 212 IPR007454 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01839 - - - cmo:103488883 337.421
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01839 Cma18g00692 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00692 Cma-Chr18:6340402 Cma04g01839 Cma-Chr4:9269919 1.79E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1253 . . Bda01g02177 . . . . . Cmo04g01936 . . Cma18g00692 . Car18g00641 Sed04g0293 Cpe09g00593 Cpe01g01619 Bhi07g01930 Tan04g0042 Cmetu10g0783 Lac13g0048 Hepe10g1511 . . . . . . . . . . . . . . . . Cme10g00667 . . . . . . Bma01g00007 . . . . Cma04g01839 . . . . . . . . . . . . Cla11g01333 Cam11g1392 Cec11g1414 Cco11g1410 Clacu11g1550 Cmu11g1371 Cre11g1789 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009665 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01839 Cma_Chr04 FPKM 1.610851 1.926212 6.535662 9.510319 20.931396 22.35244 18.469223 2.998968 2.823935 2.34101