Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01842 ATGTCGCAGGTTGATAGCAGGAATTCATCTGCAGCCAAACGTGCTAGAACTGATGGTAGTCGAAGGGAAGATGATTGGACTTGTCCTAGTTGTGGAAACGTCAATTTTTCGTTTAGAACAACTTGCAATATGCGTAATTGCACTCAGCCACGTCCTGCTGATCATAACTCTAAATCTGCTGCCAAGCCCGTTCAAGCACTTCAGGGTTACTCTTATTCTGCCCCTTACATGGGTTCAGGTGTACCCTCTTCAATGTATCCTGGTGTACCACCATATGGTTCTTCCATATTCAACGGTTCATCTATACCTCCCTATGATGTGCCATTTTCTGGGGGATCAGCATATCATTACAACTACGGCAGCCGGTTTTCTGCAGGCAGTCCCTATAGACCCTTGCACCTATCTGGGCCTCCACCTTATTCAAGTGCAGTGTATGGTATGCCTCCCATAATGGATCGCTATGGCATGGCTTTGCCAATGGGCCCTGGCACCCTGGGTCCAAGGCCAGGTTTTTTTCCAGATGATATGTCTCAGAAGAAGGGTGCAGATGCTACTCGCGACAATGATTGGGCATGCCCAAAATGTGGAAATATCAACTTCTCATTTAGAACTGTCTGTAACATGAGAAAGTGCAATACTCCTAAGCCCGGGTCACAGGGTTCCAAAAATGACAAAACTACTAAGCAAAAGACGCCAGAGGGTAGCTGGAAGTGCGAGAAATGTAACAACATAAATTATCCATTCCGAAACAAGTGCAATAGACAAAATTGCGGAGCAGACAAGCCAGCGGGTTCAGAGAAATCTTCATCACCTGCACAGGAAGAAAATGATCAGTGGATTTCACACAATTTAATTAACAAGATAATTTATGAACCACTTGAAAAGGGATACCCTTTTGGTAAATTCTCGGTGGCAGGGGTATAA 924 44.91 MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPVQALQGYSYSAPYMGSGVPSSMYPGVPPYGSSIFNGSSIPPYDVPFSGGSAYHYNYGSRFSAGSPYRPLHLSGPPPYSSAVYGMPPIMDRYGMALPMGPGTLGPRPGFFPDDMSQKKGADATRDNDWACPKCGNINFSFRTVCNMRKCNTPKPGSQGSKNDKTTKQKTPEGSWKCEKCNNINYPFRNKCNRQNCGADKPAGSEKSSSPAQEENDQWISHNLINKIIYEPLEKGYPFGKFSVAGV 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9281138 9286315 + CmaCh04G018420.1 Cma04g01842 292923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01842 307 MobiDBLite consensus disorder prediction 213 234 - -
Cma04g01842 307 SMART zf_4 234 260 IPR001876 -
Cma04g01842 307 SMART zf_4 24 50 IPR001876 -
Cma04g01842 307 SMART zf_4 188 214 IPR001876 -
Cma04g01842 307 MobiDBLite consensus disorder prediction 262 278 - -
Cma04g01842 307 SUPERFAMILY Ran binding protein zinc finger-like 227 264 IPR036443 -
Cma04g01842 307 Pfam Zn-finger in Ran binding protein and others 187 216 IPR001876 -
Cma04g01842 307 Pfam Zn-finger in Ran binding protein and others 232 262 IPR001876 -
Cma04g01842 307 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Cma04g01842 307 Gene3D - 14 54 - -
Cma04g01842 307 Gene3D - 223 265 - -
Cma04g01842 307 Gene3D - 177 218 - -
Cma04g01842 307 PANTHER OS08G0521400 PROTEIN 5 274 - -
Cma04g01842 307 MobiDBLite consensus disorder prediction 259 278 - -
Cma04g01842 307 MobiDBLite consensus disorder prediction 11 25 - -
Cma04g01842 307 SUPERFAMILY Ran binding protein zinc finger-like 182 218 IPR036443 -
Cma04g01842 307 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Cma04g01842 307 MobiDBLite consensus disorder prediction 1 27 - -
Cma04g01842 307 PANTHER ZINC FINGER PROTEIN 5 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01842 - - - cmax:111492911 641.728
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01842 Cma18g00689 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01842 Cma-Chr4:9281138 Cma05g01114 Cma-Chr5:8766781 6.04E-06 dispersed
Cma18g00689 Cma-Chr18:6327746 Cma04g01842 Cma-Chr4:9281138 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01842 Cma_Chr04 FPKM 21.468386 18.862492 24.239738 21.38574 26.037441 29.980381 27.062277 21.830845 19.391584 21.161875