Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01855 ATGGAGACTCACTTTAATCACAATCTATTCGACAGGCGACCCATTCGGAAGAACACGAATTCTTCTGTCAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTCAAATGGGTTACAGAGGATACATTGAAGGCACTAAAGGAGAAGTCAAAACAGTCGGAAGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGGCAATATGTTTGTCACTACGATGGCTGTGGAAAGAAATTTTTGGATAGCTCGAAGTTGAAAAGACACTTCCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCACATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATTCCCTGATTGTGGAAAGAGATTTGCACACGAGTACAAATTGAAGAACCACGTTACATCTCACCATGAAAAGAATGCGACAGCTGAAGTGGTCAAATATACCCCACCTTTCGAGAAGCAAACTAAGGCTTCTAAACCTTCTGGAGGAGCTTCTGCTTCGGCATCATCAGACCGTCCACACGCTTGCCCCTATGAAGGGTGTGAAAAGGCTTACATCCATGAATACAAGCTTAAACTCCATTTGAAAAGGGAACACCCTGGACATTTTGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGATAGAAGCCAGTGATCAAGATGGCTATGGCGGAAAGCGGGTAAATGTAAAAAACCAGAAACGGAACAGGCCTAAACCAAACTTGAAGTTACCGCCTTCGAAAGTAGCACAGCGAAAAGGCGCAACGCCATCTCCTGCCCCAATGAGTGCTGCAGTTAAAAAATCATGGCGGGTTAAAGAAGAAAACTACGAAGAAGAAGAAGAAGATAGTGAAGAAACTGAGGAGGACCGTGAGAATGTGGAGGGCTGGGGATATGCTGAAAACGAAGATGATGATGAGGAAACAGACGAGGAAGAAAGCTTCGAAGTTGGGAATTCGACAATGGCTGCCTCAGCGTCCACCTCGTCTCCTTTGGGGGAAGAGATAACACTGACTGTGAAATGGAGCGGTAAGGAGTACACTGTACGAGTCTGCGGTGATGACTCTGTGGCTGAGCTGAAGCGTCGAATCTGCGAGCTTACTAACGTCTTGCCCAAGCGCCAAAAGCTTCTTTATCCCAAAGTCGGATCCAAACTAGCCGATGATTCGCTTTTGCTCTCTCAGCTTCCCCTCAAGTCATCTCTCAAGATGACCATGATCGGAACTGTTGAAGATGATATAATTGTGGATCAAGTGGACTCTCCTGAAATTATTGACGATTTCGAACTTGGGAAAGATGAAGTCATTGACATTAAGGACAAGGATGTCAATAAGCAGAAACTGAGAAGGCGTATTGGTCAATACAAGATAGAACTTCGCAATCCATGCCGTGAAGGAAAGAAATTACTTGTTCTGGACATTGATTATACACTTTTTGATCATCGCTCTCCTGCAGAAAATCCTCTTCAACTCATGCGGCCTTATCTTCATGAATTTCTGACTGCTGCTTACGCTGAATATGATATCATGATATGGTCAGCAACCAGCCTTAAGTGGGTTGAATTAAAGATGGGCCAGCTTGGCGTTCTCAGTAATCCAAACTACAAAATCACTGCCCTTCTAGACCATTTAGCTATGATCACAGTTCAGTCAGATTCTCGTGGGACCTTTGATTGCAAGCCACTAGGCTTGATTTGGGCACAGTTTCCAGAGTTTTATAGTTCGAGAAATACTATAATGTTTGATGATCTTCGGAGAAACTTTGTAATGAACCCACAAAATGGCCTGGTAATTAGGCCATTCAGGAAAGCTCATGCTAATCGTGATAGTGACCAAGAGCTTATGAAGCTCACTCAGTACTTGCTTGCCATTGCGGAACTCGACGACTTGAGCCCTCTTGATCATAACGATTGGGAGCTATACTCTGAAGATGGTCCGAAAAGACGGCGGCATGCATGA 2133 43.93 METHFNHNLFDRRPIRKNTNSSVKWIKEWVPQDVVATGGKCFLFKWVTEDTLKALKEKSKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPFPDCGKRFAHEYKLKNHVTSHHEKNATAEVVKYTPPFEKQTKASKPSGGASASASSDRPHACPYEGCEKAYIHEYKLKLHLKREHPGHFVEDNGNAPHNGENEIEASDQDGYGGKRVNVKNQKRNRPKPNLKLPPSKVAQRKGATPSPAPMSAAVKKSWRVKEENYEEEEEDSEETEEDRENVEGWGYAENEDDDEETDEEESFEVGNSTMAASASTSSPLGEEITLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKVGSKLADDSLLLSQLPLKSSLKMTMIGTVEDDIIVDQVDSPEIIDDFELGKDEVIDIKDKDVNKQKLRRRIGQYKIELRNPCREGKKLLVLDIDYTLFDHRSPAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSLKWVELKMGQLGVLSNPNYKITALLDHLAMITVQSDSRGTFDCKPLGLIWAQFPEFYSSRNTIMFDDLRRNFVMNPQNGLVIRPFRKAHANRDSDQELMKLTQYLLAIAELDDLSPLDHNDWELYSEDGPKRRRHA 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9405328 9414983 - CmaCh04G018550.1 Cma04g01855 292936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01855 710 Gene3D Classic Zinc Finger 103 133 - -
Cma04g01855 710 MobiDBLite consensus disorder prediction 374 390 - -
Cma04g01855 710 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Cma04g01855 710 TIGRFAM HAD_IIID1: HAD hydrolase, family IIID 505 698 IPR011943 GO:0004721|GO:0005634
Cma04g01855 710 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Cma04g01855 710 Gene3D Classic Zinc Finger 77 102 - -
Cma04g01855 710 Gene3D Classic Zinc Finger 134 161 - -
Cma04g01855 710 MobiDBLite consensus disorder prediction 334 350 - -
Cma04g01855 710 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Cma04g01855 710 Gene3D Classic Zinc Finger 162 191 - -
Cma04g01855 710 Gene3D Classic Zinc Finger 204 268 - -
Cma04g01855 710 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Cma04g01855 710 CDD Ubl_UBLCP1 394 467 - -
Cma04g01855 710 SUPERFAMILY Ubiquitin-like 391 484 IPR029071 -
Cma04g01855 710 MobiDBLite consensus disorder prediction 205 229 - -
Cma04g01855 710 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Cma04g01855 710 Gene3D - 477 703 IPR023214 -
Cma04g01855 710 SMART forpap2 524 666 IPR004274 -
Cma04g01855 710 Gene3D - 391 469 - -
Cma04g01855 710 SUPERFAMILY beta-beta-alpha zinc fingers 151 192 IPR036236 -
Cma04g01855 710 MobiDBLite consensus disorder prediction 357 373 - -
Cma04g01855 710 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Cma04g01855 710 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Cma04g01855 710 ProSiteProfiles FCP1 homology domain profile. 521 682 IPR004274 -
Cma04g01855 710 Pfam Ubiquitin family 396 447 IPR000626 GO:0005515
Cma04g01855 710 PANTHER UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 381 701 - -
Cma04g01855 710 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Cma04g01855 710 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Cma04g01855 710 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 381 701 - -
Cma04g01855 710 ProSiteProfiles Ubiquitin domain profile. 394 465 IPR000626 GO:0005515
Cma04g01855 710 SUPERFAMILY HAD-like 513 691 IPR036412 -
Cma04g01855 710 SMART ubq_7 394 467 IPR000626 GO:0005515
Cma04g01855 710 Pfam NLI interacting factor-like phosphatase 526 688 IPR004274 -
Cma04g01855 710 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Cma04g01855 710 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Cma04g01855 710 SMART c2h2final6 136 160 IPR013087 -
Cma04g01855 710 SMART c2h2final6 166 190 IPR013087 -
Cma04g01855 710 SMART c2h2final6 77 101 IPR013087 -
Cma04g01855 710 SMART c2h2final6 229 254 IPR013087 -
Cma04g01855 710 SMART c2h2final6 106 130 IPR013087 -
Cma04g01855 710 Coils Coil 328 348 - -
Cma04g01855 710 MobiDBLite consensus disorder prediction 209 223 - -
Cma04g01855 710 MobiDBLite consensus disorder prediction 256 390 - -
Cma04g01855 710 SUPERFAMILY beta-beta-alpha zinc fingers 121 163 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01855 Cma-Chr4:9405328 Cma13g00777 Cma-Chr13:6687078 1.26E-12 dispersed
Cma18g00675 Cma-Chr18:6243887 Cma04g01855 Cma-Chr4:9405328 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34906 PF03031 NIF 2.10E-25 CL0137 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01855 K17618 - cmax:111492851 702.59