Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01855 | ATGGAGACTCACTTTAATCACAATCTATTCGACAGGCGACCCATTCGGAAGAACACGAATTCTTCTGTCAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTCAAATGGGTTACAGAGGATACATTGAAGGCACTAAAGGAGAAGTCAAAACAGTCGGAAGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGGCAATATGTTTGTCACTACGATGGCTGTGGAAAGAAATTTTTGGATAGCTCGAAGTTGAAAAGACACTTCCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCACATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATTCCCTGATTGTGGAAAGAGATTTGCACACGAGTACAAATTGAAGAACCACGTTACATCTCACCATGAAAAGAATGCGACAGCTGAAGTGGTCAAATATACCCCACCTTTCGAGAAGCAAACTAAGGCTTCTAAACCTTCTGGAGGAGCTTCTGCTTCGGCATCATCAGACCGTCCACACGCTTGCCCCTATGAAGGGTGTGAAAAGGCTTACATCCATGAATACAAGCTTAAACTCCATTTGAAAAGGGAACACCCTGGACATTTTGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGATAGAAGCCAGTGATCAAGATGGCTATGGCGGAAAGCGGGTAAATGTAAAAAACCAGAAACGGAACAGGCCTAAACCAAACTTGAAGTTACCGCCTTCGAAAGTAGCACAGCGAAAAGGCGCAACGCCATCTCCTGCCCCAATGAGTGCTGCAGTTAAAAAATCATGGCGGGTTAAAGAAGAAAACTACGAAGAAGAAGAAGAAGATAGTGAAGAAACTGAGGAGGACCGTGAGAATGTGGAGGGCTGGGGATATGCTGAAAACGAAGATGATGATGAGGAAACAGACGAGGAAGAAAGCTTCGAAGTTGGGAATTCGACAATGGCTGCCTCAGCGTCCACCTCGTCTCCTTTGGGGGAAGAGATAACACTGACTGTGAAATGGAGCGGTAAGGAGTACACTGTACGAGTCTGCGGTGATGACTCTGTGGCTGAGCTGAAGCGTCGAATCTGCGAGCTTACTAACGTCTTGCCCAAGCGCCAAAAGCTTCTTTATCCCAAAGTCGGATCCAAACTAGCCGATGATTCGCTTTTGCTCTCTCAGCTTCCCCTCAAGTCATCTCTCAAGATGACCATGATCGGAACTGTTGAAGATGATATAATTGTGGATCAAGTGGACTCTCCTGAAATTATTGACGATTTCGAACTTGGGAAAGATGAAGTCATTGACATTAAGGACAAGGATGTCAATAAGCAGAAACTGAGAAGGCGTATTGGTCAATACAAGATAGAACTTCGCAATCCATGCCGTGAAGGAAAGAAATTACTTGTTCTGGACATTGATTATACACTTTTTGATCATCGCTCTCCTGCAGAAAATCCTCTTCAACTCATGCGGCCTTATCTTCATGAATTTCTGACTGCTGCTTACGCTGAATATGATATCATGATATGGTCAGCAACCAGCCTTAAGTGGGTTGAATTAAAGATGGGCCAGCTTGGCGTTCTCAGTAATCCAAACTACAAAATCACTGCCCTTCTAGACCATTTAGCTATGATCACAGTTCAGTCAGATTCTCGTGGGACCTTTGATTGCAAGCCACTAGGCTTGATTTGGGCACAGTTTCCAGAGTTTTATAGTTCGAGAAATACTATAATGTTTGATGATCTTCGGAGAAACTTTGTAATGAACCCACAAAATGGCCTGGTAATTAGGCCATTCAGGAAAGCTCATGCTAATCGTGATAGTGACCAAGAGCTTATGAAGCTCACTCAGTACTTGCTTGCCATTGCGGAACTCGACGACTTGAGCCCTCTTGATCATAACGATTGGGAGCTATACTCTGAAGATGGTCCGAAAAGACGGCGGCATGCATGA | 2133 | 43.93 | METHFNHNLFDRRPIRKNTNSSVKWIKEWVPQDVVATGGKCFLFKWVTEDTLKALKEKSKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPFPDCGKRFAHEYKLKNHVTSHHEKNATAEVVKYTPPFEKQTKASKPSGGASASASSDRPHACPYEGCEKAYIHEYKLKLHLKREHPGHFVEDNGNAPHNGENEIEASDQDGYGGKRVNVKNQKRNRPKPNLKLPPSKVAQRKGATPSPAPMSAAVKKSWRVKEENYEEEEEDSEETEEDRENVEGWGYAENEDDDEETDEEESFEVGNSTMAASASTSSPLGEEITLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKVGSKLADDSLLLSQLPLKSSLKMTMIGTVEDDIIVDQVDSPEIIDDFELGKDEVIDIKDKDVNKQKLRRRIGQYKIELRNPCREGKKLLVLDIDYTLFDHRSPAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSLKWVELKMGQLGVLSNPNYKITALLDHLAMITVQSDSRGTFDCKPLGLIWAQFPEFYSSRNTIMFDDLRRNFVMNPQNGLVIRPFRKAHANRDSDQELMKLTQYLLAIAELDDLSPLDHNDWELYSEDGPKRRRHA | 710 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 9405328 | 9414983 | - | CmaCh04G018550.1 | Cma04g01855 | 292936 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01855 | 710 | Gene3D | Classic Zinc Finger | 103 | 133 | - | - | |
Cma04g01855 | 710 | MobiDBLite | consensus disorder prediction | 374 | 390 | - | - | |
Cma04g01855 | 710 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 231 | 254 | IPR013087 | - | |
Cma04g01855 | 710 | TIGRFAM | HAD_IIID1: HAD hydrolase, family IIID | 505 | 698 | IPR011943 | GO:0004721|GO:0005634 | |
Cma04g01855 | 710 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 130 | IPR036236 | - | |
Cma04g01855 | 710 | Gene3D | Classic Zinc Finger | 77 | 102 | - | - | |
Cma04g01855 | 710 | Gene3D | Classic Zinc Finger | 134 | 161 | - | - | |
Cma04g01855 | 710 | MobiDBLite | consensus disorder prediction | 334 | 350 | - | - | |
Cma04g01855 | 710 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 101 | IPR013087 | - | |
Cma04g01855 | 710 | Gene3D | Classic Zinc Finger | 162 | 191 | - | - | |
Cma04g01855 | 710 | Gene3D | Classic Zinc Finger | 204 | 268 | - | - | |
Cma04g01855 | 710 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 135 | IPR013087 | - | |
Cma04g01855 | 710 | CDD | Ubl_UBLCP1 | 394 | 467 | - | - | |
Cma04g01855 | 710 | SUPERFAMILY | Ubiquitin-like | 391 | 484 | IPR029071 | - | |
Cma04g01855 | 710 | MobiDBLite | consensus disorder prediction | 205 | 229 | - | - | |
Cma04g01855 | 710 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 130 | IPR013087 | - | |
Cma04g01855 | 710 | Gene3D | - | 477 | 703 | IPR023214 | - | |
Cma04g01855 | 710 | SMART | forpap2 | 524 | 666 | IPR004274 | - | |
Cma04g01855 | 710 | Gene3D | - | 391 | 469 | - | - | |
Cma04g01855 | 710 | SUPERFAMILY | beta-beta-alpha zinc fingers | 151 | 192 | IPR036236 | - | |
Cma04g01855 | 710 | MobiDBLite | consensus disorder prediction | 357 | 373 | - | - | |
Cma04g01855 | 710 | Pfam | Zinc finger, C2H2 type | 136 | 160 | IPR013087 | - | |
Cma04g01855 | 710 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 195 | IPR013087 | - | |
Cma04g01855 | 710 | ProSiteProfiles | FCP1 homology domain profile. | 521 | 682 | IPR004274 | - | |
Cma04g01855 | 710 | Pfam | Ubiquitin family | 396 | 447 | IPR000626 | GO:0005515 | |
Cma04g01855 | 710 | PANTHER | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | 381 | 701 | - | - | |
Cma04g01855 | 710 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 191 | IPR013087 | - | |
Cma04g01855 | 710 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 136 | 165 | IPR013087 | - | |
Cma04g01855 | 710 | PANTHER | HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED | 381 | 701 | - | - | |
Cma04g01855 | 710 | ProSiteProfiles | Ubiquitin domain profile. | 394 | 465 | IPR000626 | GO:0005515 | |
Cma04g01855 | 710 | SUPERFAMILY | HAD-like | 513 | 691 | IPR036412 | - | |
Cma04g01855 | 710 | SMART | ubq_7 | 394 | 467 | IPR000626 | GO:0005515 | |
Cma04g01855 | 710 | Pfam | NLI interacting factor-like phosphatase | 526 | 688 | IPR004274 | - | |
Cma04g01855 | 710 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 106 | IPR013087 | - | |
Cma04g01855 | 710 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 138 | 160 | IPR013087 | - | |
Cma04g01855 | 710 | SMART | c2h2final6 | 136 | 160 | IPR013087 | - | |
Cma04g01855 | 710 | SMART | c2h2final6 | 166 | 190 | IPR013087 | - | |
Cma04g01855 | 710 | SMART | c2h2final6 | 77 | 101 | IPR013087 | - | |
Cma04g01855 | 710 | SMART | c2h2final6 | 229 | 254 | IPR013087 | - | |
Cma04g01855 | 710 | SMART | c2h2final6 | 106 | 130 | IPR013087 | - | |
Cma04g01855 | 710 | Coils | Coil | 328 | 348 | - | - | |
Cma04g01855 | 710 | MobiDBLite | consensus disorder prediction | 209 | 223 | - | - | |
Cma04g01855 | 710 | MobiDBLite | consensus disorder prediction | 256 | 390 | - | - | |
Cma04g01855 | 710 | SUPERFAMILY | beta-beta-alpha zinc fingers | 121 | 163 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01855 | Cma-Chr4:9405328 | Cma13g00777 | Cma-Chr13:6687078 | 1.26E-12 | dispersed | |
Cma18g00675 | Cma-Chr18:6243887 | Cma04g01855 | Cma-Chr4:9405328 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34906 | PF03031 | NIF | 2.10E-25 | CL0137 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01855 | K17618 | - | cmax:111492851 | 702.59 |