Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01856 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCACCATCATCACCATTCAAACCCGAACCAGAAGCAGCCGCAGCCGCAGCAGCAGCATCATGTGGTCCCTTTCGATGGCAGATCAGCCGCTGCAGGAGGTGGTCCACCGTTCATGGGCTCCATCTCCACTCTTGTCTCCCTCCCTCCTCCTTCTTCCTCTGCTTCTAATTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCCGCCGTTGTTCCGCCTCCTCACCTCCTCGATGCCTCACTCGTCATCGCCANCAGATCCGATACCACCACCAATCCTTCTCCTCGATCTGCCTCCGCCTCCGCCTCCGCCTCCACCTCCAACGCCAACGCCCTCAAGCGTTCTACTAAAGATCGGCATACTAAGGTCGACGGTCGTGGCCGACGCATCCGTATGCCGGCTACTTGTGCGGCTAGGGTTTTCCAATTGACCCGCGAATTGGGGCATAAGTCCGACGGCGAGACCATCGAGTGGCTTCTCCAGCAAGCTGAGCCTGCGATTATCGCCGCCACTGGTACTGGAACAATCCCTGCTAATTTCTCCTCCTTGAACATTTCCATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCAAAATCTGCTCCTCATTCCTTCCATGGCGCTTTGGCTCTCGCTCACCATCCCAACGCCTACGAGGAAGGCTTCGCTCATGCTGCTCTGCTAGGGTTTCACCACCACCACCACCATCAGCAACAGCAGCAGCACCACCACCAACTTAATCTAATGACCGCCGATCAAATTGCCGACGCTCTCCCCGGCGGCGAGAGCGGCGGCGGCGGCGGAGGAGGAGGAGACTCGACGGATAACTATATGAGAAAACGCTACAGAGAAGACCTGTTTAAAGAGGACACGCAATCTCCAGGGGAGAGCAGCGGCGGTGCTGGATCTCCCAAAGCGATTAAGAGCGATCTGCAATTAGAGAAACAACAATCGCAGCAGCAATCAGCATCCTCGAGCCTACTCCGTCCTGCGACTGCGATGTGGGCCGTCGCTCCAAGCAGTGGAGCGAGCAACACGTTTTGGATGTTGCCAGTAACAACAGGATCAGGCGGAGCAAATGTAGGAAGCTCTGGAGCAAGCGGTGGTCCAATGGAAGCTCAAATGTGGCCATTCTCAACGAGTGCAAACACATTGCAGGCTCCATTGCATTTCATGCCAAGATTCAACATCCCTGGAGGCGTCGAAATTCAGGCGGCGGGTGCGGCAGCAGGAGGCGGAGGAAGAGCCGGCCAATTACAACTCGGTTCCATGCTAATGCATCAACAACAGCAACAGCAACAGCAACAGCAACAGCAGCATCAGCAGCTTGGGCTGGGAGTATCAGAGTCCAATTTGGGAGTGTTAGCAGCTCTGAATGCTGCGTATTCCAGAGGCGGGTTCAATGCTAATTCAGATCATCACCATAATCATCATCCATTGGAGCATCATTCCAACGCACCGCAGCCTCACGCAACCGATAGTGGGGACGAAGATCCAAACACTTCCCAGTGA 1557 54.85 MELTDMQQSNKQQQQHHHHHSNPNQKQPQPQQQHHVVPFDGRSAAAGGGPPFMGSISTLVSLPPPSSSASNSSSSSSSSSSSAVVPPPHLLDASLVIAXRSDTTTNPSPRSASASASASTSNANALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPNAYEEGFAHAALLGFHHHHHHQQQQQHHHQLNLMTADQIADALPGGESGGGGGGGGDSTDNYMRKRYREDLFKEDTQSPGESSGGAGSPKAIKSDLQLEKQQSQQQSASSSLLRPATAMWAVAPSSGASNTFWMLPVTTGSGGANVGSSGASGGPMEAQMWPFSTSANTLQAPLHFMPRFNIPGGVEIQAAGAAAGGGGRAGQLQLGSMLMHQQQQQQQQQQQQHQQLGLGVSESNLGVLAALNAAYSRGGFNANSDHHHNHHPLEHHSNAPQPHATDSGDEDPNTSQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9424413 9425969 + CmaCh04G018560.1 Cma04g01856 292937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01856 518 MobiDBLite consensus disorder prediction 291 306 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 502 518 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 325 341 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 479 518 - -
Cma04g01856 518 PANTHER TRANSCRIPTION FACTOR TCP8 15 518 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 59 85 - -
Cma04g01856 518 Pfam TCP family transcription factor 129 259 IPR017887 -
Cma04g01856 518 MobiDBLite consensus disorder prediction 485 499 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 245 341 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 1 142 - -
Cma04g01856 518 ProSiteProfiles TCP domain profile. 130 184 IPR017887 -
Cma04g01856 518 MobiDBLite consensus disorder prediction 98 126 - -
Cma04g01856 518 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 518 IPR005333 GO:0003700
Cma04g01856 518 MobiDBLite consensus disorder prediction 127 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01856 - - - csv:101222378 485.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01856 Cma-Chr4:9424413 Cma10g00186 Cma-Chr10:850757 3.49E-47 dispersed
Cma04g01856 Cma-Chr4:9424413 Cma18g01160 Cma-Chr18:9296551 1.45E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma15g00788 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.9e-65 245.0
Cma04g01259 . 36 250 TCP Transcription Factor Family AT5G23280 61.8 2.2e-64 243.0
Cma04g02246 . 74 303 TCP Transcription Factor Family AT5G23280 59.9 9.4e-63 237.7
Cma18g00810 . 33 230 TCP Transcription Factor Family AT5G23280 57.6 2.6e-57 219.5
Cma04g01649 CCT,ECH 60 154 TCP Transcription Factor Family AT3G47620 88.7 5.7e-40 162.9
Cma13g01122 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.2e-39 161.0
Cma04g01856 . 129 211 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cma04g01856 . 129 221 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cma14g00730 . 49 316 TCP Transcription Factor Family AT3G27010 58.8 8.4e-61 231.5
Cma11g01520 . 32 276 TCP Transcription Factor Family AT3G27010 54.4 7.6e-54 208.4
Cma17g01429 . 37 254 TCP Transcription Factor Family AT3G27010 52.8 8.2e-48 188.3
Cma15g00788 . 10 255 TCP Transcription Factor Family AT5G08330 60.0 8.1e-64 241.1
Cma04g02246 . 40 302 TCP Transcription Factor Family AT5G08330 57.5 5.2e-63 238.4
Cma04g01259 . 8 248 TCP Transcription Factor Family AT5G08330 56.0 2.0e-62 236.5
Cma18g00810 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 3.0e-58 222.6
Cma11g00212 CCT 31 173 TCP Transcription Factor Family AT5G60970 58.6 1.6e-39 161.0
Cma14g01163 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 1.9e-37 154.1
Cma11g01924 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34907 PF03634 TCP 4.80E-39 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01856 Cma_Chr04 FPKM 17.439949 19.339775 15.990716 15.859373 15.353607 16.433987 12.275211 29.344662 30.940224 25.124655