Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01856 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCACCATCATCACCATTCAAACCCGAACCAGAAGCAGCCGCAGCCGCAGCAGCAGCATCATGTGGTCCCTTTCGATGGCAGATCAGCCGCTGCAGGAGGTGGTCCACCGTTCATGGGCTCCATCTCCACTCTTGTCTCCCTCCCTCCTCCTTCTTCCTCTGCTTCTAATTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCCGCCGTTGTTCCGCCTCCTCACCTCCTCGATGCCTCACTCGTCATCGCCANCAGATCCGATACCACCACCAATCCTTCTCCTCGATCTGCCTCCGCCTCCGCCTCCGCCTCCACCTCCAACGCCAACGCCCTCAAGCGTTCTACTAAAGATCGGCATACTAAGGTCGACGGTCGTGGCCGACGCATCCGTATGCCGGCTACTTGTGCGGCTAGGGTTTTCCAATTGACCCGCGAATTGGGGCATAAGTCCGACGGCGAGACCATCGAGTGGCTTCTCCAGCAAGCTGAGCCTGCGATTATCGCCGCCACTGGTACTGGAACAATCCCTGCTAATTTCTCCTCCTTGAACATTTCCATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCAAAATCTGCTCCTCATTCCTTCCATGGCGCTTTGGCTCTCGCTCACCATCCCAACGCCTACGAGGAAGGCTTCGCTCATGCTGCTCTGCTAGGGTTTCACCACCACCACCACCATCAGCAACAGCAGCAGCACCACCACCAACTTAATCTAATGACCGCCGATCAAATTGCCGACGCTCTCCCCGGCGGCGAGAGCGGCGGCGGCGGCGGAGGAGGAGGAGACTCGACGGATAACTATATGAGAAAACGCTACAGAGAAGACCTGTTTAAAGAGGACACGCAATCTCCAGGGGAGAGCAGCGGCGGTGCTGGATCTCCCAAAGCGATTAAGAGCGATCTGCAATTAGAGAAACAACAATCGCAGCAGCAATCAGCATCCTCGAGCCTACTCCGTCCTGCGACTGCGATGTGGGCCGTCGCTCCAAGCAGTGGAGCGAGCAACACGTTTTGGATGTTGCCAGTAACAACAGGATCAGGCGGAGCAAATGTAGGAAGCTCTGGAGCAAGCGGTGGTCCAATGGAAGCTCAAATGTGGCCATTCTCAACGAGTGCAAACACATTGCAGGCTCCATTGCATTTCATGCCAAGATTCAACATCCCTGGAGGCGTCGAAATTCAGGCGGCGGGTGCGGCAGCAGGAGGCGGAGGAAGAGCCGGCCAATTACAACTCGGTTCCATGCTAATGCATCAACAACAGCAACAGCAACAGCAACAGCAACAGCAGCATCAGCAGCTTGGGCTGGGAGTATCAGAGTCCAATTTGGGAGTGTTAGCAGCTCTGAATGCTGCGTATTCCAGAGGCGGGTTCAATGCTAATTCAGATCATCACCATAATCATCATCCATTGGAGCATCATTCCAACGCACCGCAGCCTCACGCAACCGATAGTGGGGACGAAGATCCAAACACTTCCCAGTGA 1557 54.85 MELTDMQQSNKQQQQHHHHHSNPNQKQPQPQQQHHVVPFDGRSAAAGGGPPFMGSISTLVSLPPPSSSASNSSSSSSSSSSSAVVPPPHLLDASLVIAXRSDTTTNPSPRSASASASASTSNANALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPNAYEEGFAHAALLGFHHHHHHQQQQQHHHQLNLMTADQIADALPGGESGGGGGGGGDSTDNYMRKRYREDLFKEDTQSPGESSGGAGSPKAIKSDLQLEKQQSQQQSASSSLLRPATAMWAVAPSSGASNTFWMLPVTTGSGGANVGSSGASGGPMEAQMWPFSTSANTLQAPLHFMPRFNIPGGVEIQAAGAAAGGGGRAGQLQLGSMLMHQQQQQQQQQQQQHQQLGLGVSESNLGVLAALNAAYSRGGFNANSDHHHNHHPLEHHSNAPQPHATDSGDEDPNTSQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9424413 9425969 + CmaCh04G018560.1 Cma04g01856 292937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01856 518 MobiDBLite consensus disorder prediction 291 306 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 502 518 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 325 341 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 479 518 - -
Cma04g01856 518 PANTHER TRANSCRIPTION FACTOR TCP8 15 518 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 59 85 - -
Cma04g01856 518 Pfam TCP family transcription factor 129 259 IPR017887 -
Cma04g01856 518 MobiDBLite consensus disorder prediction 485 499 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 245 341 - -
Cma04g01856 518 MobiDBLite consensus disorder prediction 1 142 - -
Cma04g01856 518 ProSiteProfiles TCP domain profile. 130 184 IPR017887 -
Cma04g01856 518 MobiDBLite consensus disorder prediction 98 126 - -
Cma04g01856 518 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 518 IPR005333 GO:0003700
Cma04g01856 518 MobiDBLite consensus disorder prediction 127 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01856 Cma-Chr4:9424413 Cma10g00186 Cma-Chr10:850757 3.49E-47 dispersed
Cma04g01856 Cma-Chr4:9424413 Cma18g01160 Cma-Chr18:9296551 1.45E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34907 PF03634 TCP 4.80E-39 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01856 - - csv:101222378 485.337