Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01882 ATGTCCCTTCCGTCCCCTTCTCTCTTTCTCCTCTTCTTTCCTCTCTTTCTTTCTCCCCTCTCCGCCGCATCTCACCGGACCTTCCTCCCCCTCCTCCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCATCAATGCCTCCTACTCAACCTCCTTCTCTCTCTCCCTTGCCTCAACCTCAGCACCTACACCCCAAGCTCCCCTTCTCCTCCACTTCCTACTCCTCGCCCCCCAAACCCTTTTTTCCCTCCTACCCTTCCTCGCCCCCGCCGCCTCCGACACCCCCTTCCACGGCGCTTCCTACGTTTCCGGCTAACATTTCTGCTCTTCTCTTCCCTCAGCCTACTTCTTCTTCCCACCACCTCCACCGCCACGTCTTTGCCATTGTCATCTCTCTCTCTCTTGCTTTCTCTGTTCTTGTTCTTCTCCTTGCTCTGTTCTTTTACTTTCGTAAGCGGAACCCACAAGTCTCTGCTACTGATAAGGCCTCCGGTACTGATAATCTCCGCCTCTACCCGCCGGGTATCGACACTTCCGATGGACTTCACAAGCACAGAACCTCCTCTACTACCACCTCCAAATTTCTCTATCTTGGAACTTTGGCTACTTCTCCAGAGATTGATGAGGAGGCTCCCGGAACTGTGGATGACGGTGCCGGCGGGATTGTGGAGTCGGTTTCTCCGGTGAAAATGGGATCCCCGGAGCTGAACCCCCTTCCGCCTCTTCCTCGCCGGAATTTCGCCCAAGATTATCGGAGGAATGTAGATGGTAGTGATAAGGATGATGATGAAGATGGCGAGGACGAAGAGTTCTTTTCGCCGAGAGGGTCTTCCGTCGGCGGGAAGGAGAATATGGGGAGTAATAGAAGATTGAGCCCTGTGAAATTGTTTCAATATGTGGAAACTGAAAATTTCTTGAGGAAAAGCTATAATTCGAGTTTGAATTCTGGTTCACCCTCTGTTTCCGTTCCCAATAGTCCTTCTCCGCCATTGATCTTCAGCCCCACCAGCTTAATCTCGAAATCGCCTGACTCCATTATCAGATTTCCTGTTCCTGTACGGCAGCCGACGCTTCCGGTTCCACCATCACCGTCGTTGTCCTCTGCTTCTTCGCCACTGGGAGGTTCCGGAAACACCAAGAACTCACCATCGAGAGACTCCAATTTGTCGGAGCTACATCGGCAGTTTTCAAATGGATATAGAATGGATCACCAACAACCATTTCCGGTGAAACTGCCACCACCTCCACCTCCGCCACCGCCACCGCCGCCTCCAATGTATTGGGAGATTCCTCAATCTTCCAACAAGGAGCCGAATCTAGGTCCACCCGTACTCACAGTGCCATCAAGACCTATACTCTCCCAGAGCATAGCTCATATGTCAGCAGAGGAGCAGTCAAACACCATTGGAGATACAGAGCGAACGGAGGAAAATTCGAAGCCGAAACTGAAGGCATTGCATTGGGACAAAGTTCGAACGAGCTCCGATCGAGCCATGGTGTGGGATCAGATCAAATCGAGTTCTTTTCAGTTGAATGAAGAAATGATTGAATCACTTTTTATGGCGAATAACAATAATTCAAATCCAAGCAGCAAAGAAAATGGTGGTGTTCGTCAAAACATGGCTTTAGGGAATCAAGAGAATCGTGTTCTTGATCCTAAGAAGTCTCAGAATATTGCAATTTTGTTGAGAGCACTTAATGTTACCATTGAAGAAGTCTCAGAGGCCCTTTTGGAAGGGAATTCAGATACTTTGGGGACCGAACTGCTCGAAAGCTTACTGAAAATGGCGCCAACGGATGACGAGGAACGTAAATTAATTGAATACAAAGACGATTCGCCTTTTAAACTTGGTCCAGCTGAGAAATTCCTCAAGGTAGTTCTTGATGTACCCTTTGCATTCAAAAGGGTGGATGCTGTGCTTTACATTGCCAATTTCGATTCTGAGGTTGAGTACCTCGATCGGTCTTTCGAAACGCTTGAGGCTGCTTGTAAAGAATTGAAAGACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTGCTCAAAACTGGGAATCGAATGAATGTAGGCACGAACCGAGGCGATGCTCATGCCTTTAAACTCGACACCCTTCTCAAGCTTGTCGATATCAAGGGCACGGATGGAAAGACGACTCTCTTGCATTTCGTAGTGCAGGAGATTATTAGAGCTGAAGGTTATCGACATTCCACCTCTGATCACAACCCGACAGCTGATAAAACTCAACAATCTTCCTTAACAAATGATGTCGAATTTCGAAAGCTTGGTCTTCAAGTCGTTTCGGGTCTTAGCAGGGAGCTCTCGAGTGTGAAAAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAACGACGTAGAGAAACTTGCTAGAGGGATAACGAAAATCACTGAGGTCATAAGATTGAACGAAGATATGTCGAAAGGAGGGAGTAAGTCAAATTTCTCGGCCTCAATGAACAGGTTCTTGGGGAAGGCAGCTGAAGAAGTAGCAAGGATAGAAGTCCGAGAGCGCATTGTCGTCTCCATGGTCAAGGAAATAACCGAATACTTCCATGGAAACTTAGCGAAAGAAGAAGCTCGACCACTGCGGATTTTCATGGTGGTAAAGGATTTTCTTGGCATCTTAGATCAGCCTCCGACCGCCCATTACCAGTCACTGTGCTCCGTCCCGCCGCCTCCTCCTCCCCCTCACATTCTCTCGCCTCCCCAAAGGACTCAGAGTCACATTTCTTTGTTTAATTCCCTCAGAAACACAGTGGTCCAGCCCCTATCCCGCGCCGTTCTTGAGATGGTGCTGCTGCCTCTCACTTTTCAGATTCCTAAGTTCAATCAAGTCTCTAGGTTTTGTATGGCCATGAAGAAGCCGGAAGAAACAGTTGTAGCTTCAAGTGATCGCTATGAGATGAGGATTCCACATGTGTTGAGTGTTGCTGGTTCTGATTCAGGAGCAGGGGCTGGAATCCAAGCGGATCTTAAGACTTGTGCTGCTCGTGGAGTGTACTGTTCCACTGTGATAACTGCTGTTACTGCACAGAACACCGTGGGGGTTCAGGATGTAAACATTATGCCGGAGGGCTTTGTTTCAGAGCAGCTGAAATCTGTTCTCTCTGATATGCAAGTGGATGTGGTGAAAACAGGAATGCTACCTTCAACTGGCATCATTCAGGTTATATGTCAGCGCCTGAAGGAGTTTCCTGTTCAAGGCAAGGATCTGCATGAGCTACGATCTTCACGCATAACGACTCGCAACACTCATGGCACTGGATGCAGCTTAGCATCATGCATTGCAGCTGAGCTTGCTAAAGGGTCTTCAATGTTCTCAGCTGTTAAGATAAGCAAACAGTTTATTGAAAGAGCATTAAATTACAGCAAGGACATTAGCATTGGAAATGGACCTCAAGGCCCATTCGATCATCTATGTCGTCTTAAGAGTCGTGAACAAAGTTCGTATAGACAGGGGAGTTTCAATCAATCTGACTTATTCTTGTATGCTGTTACGGACTCGGGTATGAATAAGCGTTGGGACCGTTCTATCACAGATGCTGTTAAAGCTGCAGTTGAAGGAGGTGCTACTATCATTCAAATAAGGGAAAAGGATGCTAAAACTCGCGATTTCTTGGAAGCAGCCAAATCATGTATAGAGATTTGTCACACACACGGTGTTCCATTACTGATCAACGATCGTATTGACGTTGCACTTGCCTGTGGTGCTGATGGTGTACACATTGGTCAGTCCGATATTCCTGTTCATGCAGCTCGTAGCCTTCTTGGCCCTGATAAGATTATCGGTGTCTCATGCAAGACACCGGAGCAAGCGGAACAGGCATGGCTTGATGGTGCTGATTACATTGGGTGTGGTGGAGTTTATCCCACAAACACAAAAGCAAACAATCTGACCGTTGGGCTTGATGGATTGAAAAAGGTTTGCTTAGCTTCAAAGTTGCCTGTGGTTGCAATTGGTGGAATTAATCACAGTAATGCAGCGGCTGTGATGGAAATTGGTGTCCCAAATCTTAAAGTATCCAACTGGTCCGCGGGGCATCATGGCAAGGTGTCGACAACGGAAGGCAGGCCGAAAGGATCGGCGGAGAGGGGAGTTCTGTACAGTTGTGGTGAACATTAA 4152 47.81 MSLPSPSLFLLFFPLFLSPLSAASHRTFLPLLRHHRHLLHQPFFPWTSSMPPTQPPSLSPLPQPQHLHPKLPFSSTSYSSPPKPFFPSYPSSPPPPPTPPSTALPTFPANISALLFPQPTSSSHHLHRHVFAIVISLSLAFSVLVLLLALFFYFRKRNPQVSATDKASGTDNLRLYPPGIDTSDGLHKHRTSSTTTSKFLYLGTLATSPEIDEEAPGTVDDGAGGIVESVSPVKMGSPELNPLPPLPRRNFAQDYRRNVDGSDKDDDEDGEDEEFFSPRGSSVGGKENMGSNRRLSPVKLFQYVETENFLRKSYNSSLNSGSPSVSVPNSPSPPLIFSPTSLISKSPDSIIRFPVPVRQPTLPVPPSPSLSSASSPLGGSGNTKNSPSRDSNLSELHRQFSNGYRMDHQQPFPVKLPPPPPPPPPPPPPMYWEIPQSSNKEPNLGPPVLTVPSRPILSQSIAHMSAEEQSNTIGDTERTEENSKPKLKALHWDKVRTSSDRAMVWDQIKSSSFQLNEEMIESLFMANNNNSNPSSKENGGVRQNMALGNQENRVLDPKKSQNIAILLRALNVTIEEVSEALLEGNSDTLGTELLESLLKMAPTDDEERKLIEYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAVLYIANFDSEVEYLDRSFETLEAACKELKDSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDHNPTADKTQQSSLTNDVEFRKLGLQVVSGLSRELSSVKKAALMDADVLSNDVEKLARGITKITEVIRLNEDMSKGGSKSNFSASMNRFLGKAAEEVARIEVRERIVVSMVKEITEYFHGNLAKEEARPLRIFMVVKDFLGILDQPPTAHYQSLCSVPPPPPPPHILSPPQRTQSHISLFNSLRNTVVQPLSRAVLEMVLLPLTFQIPKFNQVSRFCMAMKKPEETVVASSDRYEMRIPHVLSVAGSDSGAGAGIQADLKTCAARGVYCSTVITAVTAQNTVGVQDVNIMPEGFVSEQLKSVLSDMQVDVVKTGMLPSTGIIQVICQRLKEFPVQGKDLHELRSSRITTRNTHGTGCSLASCIAAELAKGSSMFSAVKISKQFIERALNYSKDISIGNGPQGPFDHLCRLKSREQSSYRQGSFNQSDLFLYAVTDSGMNKRWDRSITDAVKAAVEGGATIIQIREKDAKTRDFLEAAKSCIEICHTHGVPLLINDRIDVALACGADGVHIGQSDIPVHAARSLLGPDKIIGVSCKTPEQAEQAWLDGADYIGCGGVYPTNTKANNLTVGLDGLKKVCLASKLPVVAIGGINHSNAAAVMEIGVPNLKVSNWSAGHHGKVSTTEGRPKGSAERGVLYSCGEH 1383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9679017 9707018 + CmaCh04G018820.1 Cma04g01882 292963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01882 1383 Gene3D - 961 1077 IPR029056 -
Cma04g01882 1383 Hamap Thiamine-phosphate synthase [thiE]. 1169 1373 IPR034291 GO:0004789|GO:0009228
Cma04g01882 1383 MobiDBLite consensus disorder prediction 211 292 - -
Cma04g01882 1383 SUPERFAMILY Ribokinase-like 980 1149 IPR029056 -
Cma04g01882 1383 SMART it6_source 477 920 IPR015425 -
Cma04g01882 1383 MobiDBLite consensus disorder prediction 371 393 - -
Cma04g01882 1383 Pfam Thiamine monophosphate synthase 1172 1347 IPR022998 -
Cma04g01882 1383 SUPERFAMILY Thiamin phosphate synthase 1168 1347 IPR036206 -
Cma04g01882 1383 MobiDBLite consensus disorder prediction 412 433 - -
Cma04g01882 1383 CDD TMP_TenI 1172 1345 IPR022998 -
Cma04g01882 1383 MobiDBLite consensus disorder prediction 361 393 - -
Cma04g01882 1383 Pfam Phosphomethylpyrimidine kinase 990 1076 IPR013749 -
Cma04g01882 1383 Pfam Phosphomethylpyrimidine kinase 1077 1142 IPR013749 -
Cma04g01882 1383 MobiDBLite consensus disorder prediction 406 444 - -
Cma04g01882 1383 Gene3D Aldolase class I 1158 1355 IPR013785 -
Cma04g01882 1383 Gene3D Formin, FH2 domain 475 888 IPR042201 -
Cma04g01882 1383 MobiDBLite consensus disorder prediction 464 484 - -
Cma04g01882 1383 CDD HMPP_kinase 982 1133 IPR004399 GO:0008972|GO:0009228
Cma04g01882 1383 TIGRFAM thiE: thiamine-phosphate diphosphorylase 1172 1350 IPR034291 GO:0004789|GO:0009228
Cma04g01882 1383 PANTHER FORMIN-LIKE PROTEIN 2 28 887 - -
Cma04g01882 1383 SUPERFAMILY Formin homology 2 domain (FH2 domain) 419 887 - -
Cma04g01882 1383 MobiDBLite consensus disorder prediction 83 102 - -
Cma04g01882 1383 ProSiteProfiles Formin homology-2 (FH2) domain profile. 477 911 IPR015425 -
Cma04g01882 1383 Gene3D - 1078 1152 IPR029056 -
Cma04g01882 1383 PANTHER FORMIN-RELATED 28 887 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma04g01882 1383 MobiDBLite consensus disorder prediction 72 102 - -
Cma04g01882 1383 Pfam Formin Homology 2 Domain 479 885 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01659 Cma-Chr2:9391890 Cma04g01882 Cma-Chr4:9679017 6.42E-10 dispersed
Cma04g01882 Cma-Chr4:9679017 Cma10g01113 Cma-Chr10:7607891 9.75E-113 dispersed
Cma04g01882 Cma-Chr4:9679017 Cma19g00185 Cma-Chr19:1217972 9.07E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01882 - - cmax:111492166 1419.45