Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g01883 | ATGGATGGAAATGGTGGGATCAAGTGGACTGGAATCCGCCATTTTGTGAGGCTGAAGCAGACTCTCCAACACTGGCAAGCTGTCACAGTTAACCCGAAATCCCAAGCATCCAATAAAAATCAAAGCCAAAGCCAAAATCATAATCGTGGGATCCTTTCACCAGCAATCAACAAAAGGCTGATGAATGCCATGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCTATCCGATGTCCCGAAAGGGTACTTGGCTGTTTATGTTGGGCCGGAGCTTCGTAGGTTTATCATTCCCACCAGCTATCTTAGCCATTTGGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTATGGATTCGATCACAGTGGCGGGCTAACACTCCCATGCGAGATCGAAACCTTCAAATACCTTCTCAAGTACATGGAGGTTCAGCAGCTCGATGATCATCCTGATGAGCAGACCCCAGCTGAGAGTTCTTTAAGCATGGAAGGATAA | 507 | 47.93 | MDGNGGIKWTGIRHFVRLKQTLQHWQAVTVNPKSQASNKNQSQSQNHNRGILSPAINKRLMNAMCCDSDEESCQSPEHLSDVPKGYLAVYVGPELRRFIIPTSYLSHLVFKVLLEKAEEEYGFDHSGGLTLPCEIETFKYLLKYMEVQQLDDHPDEQTPAESSLSMEG | 168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 9707022 | 9708027 | + | CmaCh04G018830.1 | Cma04g01883 | 292964 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g01883 | 168 | Pfam | Auxin responsive protein | 58 | 144 | IPR003676 | GO:0009733 | |
| Cma04g01883 | 168 | PANTHER | BNAA02G05090D PROTEIN | 7 | 158 | - | - | |
| Cma04g01883 | 168 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 7 | 158 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01883 | Cma-Chr4:9707022 | Cma06g00005 | Cma-Chr6:17377 | 6.44E-95 | dispersed | |
| Cma17g01426 | Cma-Chr17:9393713 | Cma04g01883 | Cma-Chr4:9707022 | 5.02E-16 | dispersed | |
| Cma04g01883 | Cma-Chr4:9707022 | Cma01g01589 | Cma-Chr1:10971844 | 2.94E-25 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g01883 | K14488 | - | csv:101207913 | 249.98 |