Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01887 ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGACTTGAGAGGGCACGTAAATTCCGACAGAGAGTCATTATAACCGTGGTGTTAGCCACCGTGATCATCCTCCTCATAGCCGCCGCCGTCTTCATCCAGGTCTCCCCTGCTCCCTCCTCCTCCTCCTCCTCCTCCTCCAAAACCTCCAACAAAGACGGAAAATCCAAGAAACATCCCAAATCCAACACCGACACTGACACCGGCACCAACGCCAAGGATGCGTCCAGTGCTGAGAAAATGATTGTGATGATATGCAATTCCACAGACTACAAAGAGAAATGCGAGAGCATTTTGAAGGACGGCTTGAAGGCGGACCCCAAATCCTCTGACCCCAAAGAGCTGATTAAGCTGGCCATCACCGCCGCGGCGGCTGAGGTCAAATCCGCTTTGAAAAAGGCCACTAACTTGAAATTCACGACGCCGGAGGAGAAGGGTGCGTTCGAGGACTGTAAGGTTTTGATGGAAGACGCTGTGGAGGAATTAGAGATGTCTATGACGGCGGTGAGTAAGAAGAATCAGGGGAAGCTGACGGAGAAAGCGACGCCGGATTTGAATAACTGGCTGAGTGCGGTTATGTCGTACCATGAGACTTGTGTTGATGGGTTCCCTGATGGGTCTAAGATGAAGGCGGAAATGGAGAAGATTGGGAAGAGTGGGAAGGAATTGACGAGTAATTCGATGGCGATGATATCGCAGGTGGCTACGTTCTTCTCTAAGTTTGAGTCTGAGGGGCCTGGGGAGGGTGCTGCAACACGACGGCGTTTAATGGACCAGGATGAACTTCCAAGCTGGATGGATAGCAATGAGCGGAGGATGTTGAAGGGCGCTACGGCCGGGGATAAGCCTACGCCTAATGTTGTGGTTGCCCAAGATGGGTCTGGCAATTTTAAAACTATTAATGAAGCCTTGGCTGCCATGCCTGCCAAATATGATGGACGGTACGTGATCTATCTGAAGGAAGGAATCTACGAGGAGGCAGTGGTGATCACCAAAAAGATGGTAAATGTGACAATGTACGGAGATGGGTCACAAAAGAGCATGATAAGTGGAAACAAGAACTTCGCGGATGGAGTTAGAACTTTCCAAACCGCATCTTTCGTGGCACTTGGAGACGGCTTCTTCGCGCAAGCCATAGGATTCAGAAACACAGCAGGTCCAGAGAAGCACCAAGCCGTAGCAGCAAGAGTCCAAGCAGACCGAGCCATATTCCTAAACTGCCGCTTCGACGGGTACCAGGACACGCTCTACGCACAGGCCCACCGCCATTTCTACAGAAGCTGCCTAATAGCAGGCACCATCGACTTCATCTTCGGAGACGCAGCCGCCATTTTCCAAAACTGCAACATGATGGTGAAAAAGCCGTTAGACAACCAACAGAACATAGTGACAGCACAGGGCAGAAGCGACAGACACGAAACCACAGCCATAGTGCTGCAAAGGTGCAAGATTTTAGCCGACAAGACACTGGAGCCAGTGAAGTCGCAGTTCAAAAGCTACCTGGGGAGGCCGTGGAAGGAGTACTCAAGAACCATTGTAATGGAGTCCACAATTGAGGACATAATTCACCCGGATGGGTGGTTGGCTTGGAAAGGGGATTTTGCCCTGAAGACGTTGTACTATGCGGAGTTTAACAACGAAGGGCCAGGGGCTAAGACCGAGGGCAGGGTGAAGTGGCCTGGGCATAAGGTGATTGATAAGGAGGAGGCTGCGAAGTTTACGATAGGAAGTTTTCTAGAGGTGGATTGGATCCAGAGCACGTCGGCTCCAGTTCATGTCGGCCTATTTTGA 1827 50.96 MVFQDFDQISERRRLERARKFRQRVIITVVLATVIILLIAAAVFIQVSPAPSSSSSSSSKTSNKDGKSKKHPKSNTDTDTGTNAKDASSAEKMIVMICNSTDYKEKCESILKDGLKADPKSSDPKELIKLAITAAAAEVKSALKKATNLKFTTPEEKGAFEDCKVLMEDAVEELEMSMTAVSKKNQGKLTEKATPDLNNWLSAVMSYHETCVDGFPDGSKMKAEMEKIGKSGKELTSNSMAMISQVATFFSKFESEGPGEGAATRRRLMDQDELPSWMDSNERRMLKGATAGDKPTPNVVVAQDGSGNFKTINEALAAMPAKYDGRYVIYLKEGIYEEAVVITKKMVNVTMYGDGSQKSMISGNKNFADGVRTFQTASFVALGDGFFAQAIGFRNTAGPEKHQAVAARVQADRAIFLNCRFDGYQDTLYAQAHRHFYRSCLIAGTIDFIFGDAAAIFQNCNMMVKKPLDNQQNIVTAQGRSDRHETTAIVLQRCKILADKTLEPVKSQFKSYLGRPWKEYSRTIVMESTIEDIIHPDGWLAWKGDFALKTLYYAEFNNEGPGAKTEGRVKWPGHKVIDKEEAAKFTIGSFLEVDWIQSTSAPVHVGLF 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9775204 9778371 - CmaCh04G018870.1 Cma04g01887 292968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01887 608 Pfam Plant invertase/pectin methylesterase inhibitor 94 242 IPR006501 GO:0004857
Cma04g01887 608 CDD PMEI-like_3 97 248 - -
Cma04g01887 608 SMART PMEI_2 89 242 IPR006501 GO:0004857
Cma04g01887 608 MobiDBLite consensus disorder prediction 49 85 - -
Cma04g01887 608 Gene3D - 296 608 IPR012334 -
Cma04g01887 608 SUPERFAMILY Pectin lyase-like 295 594 IPR011050 -
Cma04g01887 608 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 92 245 IPR035513 -
Cma04g01887 608 Gene3D Invertase/pectin methylesterase inhibitor family protein 90 247 IPR035513 -
Cma04g01887 608 Pfam Pectinesterase 298 592 IPR000070 GO:0030599|GO:0042545
Cma04g01887 608 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 15 606 - -
Cma04g01887 608 ProSitePatterns Pectinesterase signature 2. 442 451 IPR033131 -
Cma04g01887 608 PANTHER PECTINESTERASE 15 606 - -
Cma04g01887 608 TIGRFAM PME_inhib: pectinesterase inhibitor domain 89 246 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01887 Cma-Chr4:9775204 Cma06g00011 Cma-Chr6:87802 0 dispersed
Cma15g00859 Cma-Chr15:4329161 Cma04g01887 Cma-Chr4:9775204 1.16E-150 dispersed
Cma04g01887 Cma-Chr4:9775204 Cma08g01239 Cma-Chr8:7592616 8.48E-179 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01887 - - cmax:111492523 1160.98