Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01895 ATGGAGCTCACTACTCAAGATCATCCCATTCCCATTCCCATCCCTTTAAATAGTCGCTACGTTGGCCACGGCCACGACCACGACCATGTCATCCATCACCATGACCCGTCTGCCGCCTGCAACCATATCATCGCGGCGGCAGTCAATGGCGGCAGCCCACTTCCATCTTCTCAGATGGAAGTCGAGCTTCACCACAATCATAATAACAACAGCAACAACAATAACAACAACAACACGAAGAAGCAAGTAAAATATAAAGAGTGTCTCAAAAACCATGCGGCCTCCATGGGAGGTAATGCCACGGATGGGTGTGGCGAGTTCATGCCGAGTGGAGAAGAAGGATCCATTGAAGCCCTCACGTGTTCGGCTTGCAATTGTCATAGAAACTTCCATCGAAAAGAGATCGAGGGAGAACCCTACGACTGGCTCCACCATCCTCGCCTTGGGAGGAAGCTCCTCGTCGGAGGGAAGAACATGATCGCCCCACCAGAGGCAGCTGCATTTGCGTATCCATCGGCGGCGGGGCCGGCATTCATATCATCTAGAGCACAACCCCACCATATGATAATGTCGTACAACATGCTCGGCGGGGGAGGTGGGCAGTCAGAGTCAGAGGAGCACGAGGAGGCGAGGGCGTACTCGGGGCCAATGATGAACAAGAAGCGATTCCGAACAAAGTTCACGGCGGAGCAAAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAACAAGAGGAGAGTGTGGTGCAGCAATTCTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAATAAGCACAATCTTGGGAAGAAGGATACCATTTCTCCTCCCCATTCTCCTACTCCCTTAACTTAA 888 50.9 MELTTQDHPIPIPIPLNSRYVGHGHDHDHVIHHHDPSAACNHIIAAAVNGGSPLPSSQMEVELHHNHNNNSNNNNNNNTKKQVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPSAAGPAFISSRAQPHHMIMSYNMLGGGGGQSESEEHEEARAYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCEEIGVKRRVLKVWMHNNKHNLGKKDTISPPHSPTPLT 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9889176 9890063 + CmaCh04G018950.1 Cma04g01895 292976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01895 295 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Cma04g01895 295 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 282 - -
Cma04g01895 295 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 220 276 IPR006455 -
Cma04g01895 295 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
Cma04g01895 295 Pfam ZF-HD protein dimerisation region 82 135 IPR006456 -
Cma04g01895 295 SUPERFAMILY Homeodomain-like 212 281 IPR009057 -
Cma04g01895 295 Gene3D - 203 281 - -
Cma04g01895 295 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 38 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01895 - - - bhj:120068944 468.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00785 Cma-Chr1:4243446 Cma04g01895 Cma-Chr4:9889176 1.29E-22 dispersed
Cma04g01895 Cma-Chr4:9889176 Cma06g00008 Cma-Chr6:32657 6.50E-143 dispersed
Cma12g00219 Cma-Chr12:1073873 Cma04g01895 Cma-Chr4:9889176 1.27E-34 dispersed
Cma13g00970 Cma-Chr13:7560165 Cma04g01895 Cma-Chr4:9889176 1.92E-38 dispersed
Cma04g01895 Cma-Chr4:9889176 Cma03g00832 Cma-Chr3:6284164 1.56E-59 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00527 . 53 236 ZF-HD Transcription Factor Family AT4G24660 55.1 2.2e-50 196.4
Cma07g00562 . 47 242 ZF-HD Transcription Factor Family AT4G24660 52.6 1.2e-48 190.7
Cma04g01895 . 83 282 ZF-HD Transcription Factor Family AT2G02540 55.3 2.7e-51 199.9
Cma06g00008 . 68 262 ZF-HD Transcription Factor Family AT2G02540 51.2 2.1e-48 190.3
Cma04g01895 . 80 285 ZF-HD Transcription Factor Family AT1G14440 55.2 4.8e-56 215.7
Cma06g00008 . 56 262 ZF-HD Transcription Factor Family AT1G14440 52.1 1.2e-51 201.1
Cma03g00745 CST 11 211 ZF-HD Transcription Factor Family AT2G18350 52.2 3.1e-48 189.5
Cma14g00594 . 11 287 ZF-HD Transcription Factor Family AT5G15210 51.7 3.1e-51 199.5
Cma15g00271 . 757 977 ZF-HD Transcription Factor Family AT5G15210 55.9 1.1e-45 181.0
Cma11g01027 . 28 267 ZF-HD Transcription Factor Family AT5G15210 53.9 6.2e-44 175.3
Cma14g00594 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.8 1.3e-56 217.6
Cma04g02764 . 16 259 ZF-HD Transcription Factor Family AT3G28920 54.5 6.2e-56 215.3
Cma11g01027 . 23 255 ZF-HD Transcription Factor Family AT3G28920 59.2 1.6e-51 200.7
Cma15g00271 . 756 979 ZF-HD Transcription Factor Family AT3G28920 57.7 1.3e-50 197.6
Cma04g02764 . 25 251 ZF-HD Transcription Factor Family AT5G39760 53.8 3.2e-50 196.4
Cma14g00594 . 30 258 ZF-HD Transcription Factor Family AT5G39760 56.6 7.1e-50 195.3
Cma15g00271 . 756 983 ZF-HD Transcription Factor Family AT5G39760 56.2 2.1e-49 193.7
Cma11g01027 . 31 264 ZF-HD Transcription Factor Family AT5G39760 64.1 1.1e-47 188.0
Cma04g02764 . 55 248 ZF-HD Transcription Factor Family AT1G69600 53.9 8.8e-50 194.5
Cma18g01152 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 6.3e-48 188.3
Cma04g01895 . 83 282 ZF-HD Transcription Factor Family AT2G02540 55.3 2.7e-51 199.9
Cma06g00008 . 68 262 ZF-HD Transcription Factor Family AT2G02540 51.2 2.1e-48 190.3
Cma05g00527 . 53 236 ZF-HD Transcription Factor Family AT4G24660 55.1 2.2e-50 196.4
Cma07g00562 . 47 242 ZF-HD Transcription Factor Family AT4G24660 52.6 1.2e-48 190.7
Cma04g02764 . 25 251 ZF-HD Transcription Factor Family AT5G39760 53.8 3.2e-50 196.4
Cma14g00594 . 30 258 ZF-HD Transcription Factor Family AT5G39760 56.6 7.1e-50 195.3
Cma15g00271 . 756 983 ZF-HD Transcription Factor Family AT5G39760 56.2 2.1e-49 193.7
Cma11g01027 . 31 264 ZF-HD Transcription Factor Family AT5G39760 64.1 1.1e-47 188.0
Cma03g00745 CST 11 211 ZF-HD Transcription Factor Family AT2G18350 52.2 3.1e-48 189.5
Cma04g02764 . 55 248 ZF-HD Transcription Factor Family AT1G69600 53.9 8.8e-50 194.5
Cma18g01152 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 6.3e-48 188.3
Cma14g00594 . 11 287 ZF-HD Transcription Factor Family AT5G15210 51.7 3.1e-51 199.5
Cma15g00271 . 757 977 ZF-HD Transcription Factor Family AT5G15210 55.9 1.1e-45 181.0
Cma11g01027 . 28 267 ZF-HD Transcription Factor Family AT5G15210 53.9 6.2e-44 175.3
Cma04g01895 . 80 285 ZF-HD Transcription Factor Family AT1G14440 55.2 4.8e-56 215.7
Cma06g00008 . 56 262 ZF-HD Transcription Factor Family AT1G14440 52.1 1.2e-51 201.1
Cma14g00594 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.8 1.3e-56 217.6
Cma04g02764 . 16 259 ZF-HD Transcription Factor Family AT3G28920 54.5 6.2e-56 215.3
Cma11g01027 . 23 255 ZF-HD Transcription Factor Family AT3G28920 59.2 1.6e-51 200.7
Cma15g00271 . 756 979 ZF-HD Transcription Factor Family AT3G28920 57.7 1.3e-50 197.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34908 PF04770 ZF-HD_dimer 1.20E-29 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01895 Cma_Chr04 FPKM 0.179054 0.359615 0.461179 0.098244 25.227524 28.212093 27.03269 0.155219 0.068149 0.146523