Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g01895 | ATGGAGCTCACTACTCAAGATCATCCCATTCCCATTCCCATCCCTTTAAATAGTCGCTACGTTGGCCACGGCCACGACCACGACCATGTCATCCATCACCATGACCCGTCTGCCGCCTGCAACCATATCATCGCGGCGGCAGTCAATGGCGGCAGCCCACTTCCATCTTCTCAGATGGAAGTCGAGCTTCACCACAATCATAATAACAACAGCAACAACAATAACAACAACAACACGAAGAAGCAAGTAAAATATAAAGAGTGTCTCAAAAACCATGCGGCCTCCATGGGAGGTAATGCCACGGATGGGTGTGGCGAGTTCATGCCGAGTGGAGAAGAAGGATCCATTGAAGCCCTCACGTGTTCGGCTTGCAATTGTCATAGAAACTTCCATCGAAAAGAGATCGAGGGAGAACCCTACGACTGGCTCCACCATCCTCGCCTTGGGAGGAAGCTCCTCGTCGGAGGGAAGAACATGATCGCCCCACCAGAGGCAGCTGCATTTGCGTATCCATCGGCGGCGGGGCCGGCATTCATATCATCTAGAGCACAACCCCACCATATGATAATGTCGTACAACATGCTCGGCGGGGGAGGTGGGCAGTCAGAGTCAGAGGAGCACGAGGAGGCGAGGGCGTACTCGGGGCCAATGATGAACAAGAAGCGATTCCGAACAAAGTTCACGGCGGAGCAAAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAACAAGAGGAGAGTGTGGTGCAGCAATTCTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAATAAGCACAATCTTGGGAAGAAGGATACCATTTCTCCTCCCCATTCTCCTACTCCCTTAACTTAA | 888 | 50.9 | MELTTQDHPIPIPIPLNSRYVGHGHDHDHVIHHHDPSAACNHIIAAAVNGGSPLPSSQMEVELHHNHNNNSNNNNNNNTKKQVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPSAAGPAFISSRAQPHHMIMSYNMLGGGGGQSESEEHEEARAYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCEEIGVKRRVLKVWMHNNKHNLGKKDTISPPHSPTPLT | 295 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 9889176 | 9890063 | + | CmaCh04G018950.1 | Cma04g01895 | 292976 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g01895 | 295 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 85 | 134 | IPR006456 | - | |
| Cma04g01895 | 295 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 38 | 282 | - | - | |
| Cma04g01895 | 295 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 220 | 276 | IPR006455 | - | |
| Cma04g01895 | 295 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 84 | 135 | IPR006456 | - | |
| Cma04g01895 | 295 | Pfam | ZF-HD protein dimerisation region | 82 | 135 | IPR006456 | - | |
| Cma04g01895 | 295 | SUPERFAMILY | Homeodomain-like | 212 | 281 | IPR009057 | - | |
| Cma04g01895 | 295 | Gene3D | - | 203 | 281 | - | - | |
| Cma04g01895 | 295 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 38 | 282 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00785 | Cma-Chr1:4243446 | Cma04g01895 | Cma-Chr4:9889176 | 1.29E-22 | dispersed | |
| Cma04g01895 | Cma-Chr4:9889176 | Cma06g00008 | Cma-Chr6:32657 | 6.50E-143 | dispersed | |
| Cma12g00219 | Cma-Chr12:1073873 | Cma04g01895 | Cma-Chr4:9889176 | 1.27E-34 | dispersed | |
| Cma13g00970 | Cma-Chr13:7560165 | Cma04g01895 | Cma-Chr4:9889176 | 1.92E-38 | dispersed | |
| Cma04g01895 | Cma-Chr4:9889176 | Cma03g00832 | Cma-Chr3:6284164 | 1.56E-59 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34908 | PF04770 | ZF-HD_dimer | 1.20E-29 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g01895 | - | - | bhj:120068944 | 468.388 |