Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01901 ATGTCCTTTTCAGCTGTCTCGAATCTTCCCTCAGGAGGACCCCATTCAGTTTCAGGGTCCTCTTCTGATGCATTGTATAGGGAATTATGGCATGCCTGTGCAGGACCTCTTGTCACCCTTCCTCGCCAAGACGAACGACTGGAAGCCTCGATGAATCAAGGATTGGAGCAACAAATGCCTTCATTCAACCTAGCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCTGACACAGATGAAGTTTATGCTCAGATAACTCTGTTACCAGAAAGCAATCAAAGTGAAGTAACGACCCCAGATCCTGCACTTCCTGAGCCGACAAGATGTAACGTCCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCTGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTAGCAACTGATTTACATGGGAATCAGTGGCATTTTAGGCACATTTTCCGAGGTCAGCCAAGGCGTCATTTACTAACAACTGGGTGGAGTGTCTTCGTTAGTTCTAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAACGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAACAACATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTGTTGCAACTGGAACGCTCTTTTCTGTCTTTTACAAGCCAAGAACAAGCAGGTCTACATTTCTTGTAAGTCTAAACAAGTACCTTGAAGCTCAAAGCCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCATCACCTGGGTGGGCTAATTCTGATTGGCGATCTTTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAGGGTGTCTGCTTGGGAATTGGAACCACTTGTTGCTTCAAACCCTCTAAGCTCTCAGCCCACGCAGAGGAACAAGCGTCCACGGCCAACTGTTTTGCCTTCACCTACGGCCGATGCAGCTGTACTCGGCGGGTGGAAACCTACGGTTGAATCTTCTGCTTTTTCGTTTACTGAGCCACCACAGCGTGGAAGGGATGTGTATTCATCACCGAAGTTCAGTACTGCTGCTTCGAATTCTCTTGGTTTTAATGGGAATAGTTCTCTTGGCGCTGTGTCGAGCAACAACTACTGGTCTAATACCAATAGGGTGGAAAATATTATTGACACTTCATCTCATGGAGCTAACAGGGAACCCATTGAAAAGAAACAAAACACTAGAAATGGGTGCAGGCTTTTTGGGATCCAGCTTCTTGGAAATTCCGATGTCGGTGAAGCTTCTCCAGATACAACTCCTAAAATGGTCAGTGAGGATAGGTCGGTTCCACCGGTAGACGCAGAATTCGACCAGAATTCTGAGCGATCAAACGTTCACCGATTAGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCATGTTTGATTTCCCCACTAGAGTCTCAAAGCAGACAAATCCGTAGCTGCACGAAGGTTCATATGCAAGGAATTGCCGTTGGGAGGGCCGTTGATTTAACACGGTTCAATCAATATGATGATCTACTTAGGAAATTGGAGGATATGTTTGACATAGAGGGTGAGCTTTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGACGACGAAGATGATATGATGATGGTTGGAGACGATCCATGGAACGAGTTTGTCAGCATGGTAAGGAAGATATTCATCTACACGACCGAAGAAGTGAAGAGACTGTCGCCCAAGATAAAACTCCCCCTCGGTGGAGAGACAAAGCTTAGTAAGCCAGATTCCGATATGACTGCCAACCACACAGAGGATCAGTCGTCCATCGTCGGGTCAGATTGCTGA 2013 45.7 MSFSAVSNLPSGGPHSVSGSSSDALYRELWHACAGPLVTLPRQDERLEASMNQGLEQQMPSFNLASKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTTPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAVATGTLFSVFYKPRTSRSTFLVSLNKYLEAQSHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLKVQWDEPSSILRPDRVSAWELEPLVASNPLSSQPTQRNKRPRPTVLPSPTADAAVLGGWKPTVESSAFSFTEPPQRGRDVYSSPKFSTAASNSLGFNGNSSLGAVSSNNYWSNTNRVENIIDTSSHGANREPIEKKQNTRNGCRLFGIQLLGNSDVGEASPDTTPKMVSEDRSVPPVDAEFDQNSERSNVHRLDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEDMFDIEGELCGSVKKWQVVYTDDEDDMMMVGDDPWNEFVSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLSKPDSDMTANHTEDQSSIVGSDC 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9974922 9982984 + CmaCh04G019010.1 Cma04g01901 292982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01901 670 PANTHER AUXIN RESPONSE FACTOR 9 13 648 - -
Cma04g01901 670 SMART B3_2 119 221 IPR003340 GO:0003677
Cma04g01901 670 Pfam Auxin response factor 245 327 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma04g01901 670 Pfam AUX/IAA family 545 635 IPR033389 -
Cma04g01901 670 Gene3D - 540 634 - -
Cma04g01901 670 MobiDBLite consensus disorder prediction 1 20 - -
Cma04g01901 670 MobiDBLite consensus disorder prediction 353 369 - -
Cma04g01901 670 SUPERFAMILY CAD & PB1 domains 547 622 - -
Cma04g01901 670 MobiDBLite consensus disorder prediction 353 379 - -
Cma04g01901 670 Pfam B3 DNA binding domain 119 219 IPR003340 GO:0003677
Cma04g01901 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 648 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma04g01901 670 MobiDBLite consensus disorder prediction 480 500 - -
Cma04g01901 670 Gene3D - 282 355 - -
Cma04g01901 670 ProSiteProfiles PB1 domain profile. 545 638 IPR000270 GO:0005515
Cma04g01901 670 Gene3D - 116 221 IPR015300 -
Cma04g01901 670 CDD B3_DNA 117 219 IPR003340 GO:0003677
Cma04g01901 670 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Cma04g01901 670 MobiDBLite consensus disorder prediction 642 670 - -
Cma04g01901 670 SUPERFAMILY DNA-binding pseudobarrel domain 108 248 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01901 Cma-Chr4:9974922 Cma06g00003 Cma-Chr6:6741 0 dispersed
Cma04g01901 Cma-Chr4:9974922 Cma02g00922 Cma-Chr2:5485375 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34909 PF02309 AUX_IAA 5.70E-12 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01901 K14486 - csv:101204612 1229.16