Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01924 ATGCTTCCAATTGGAAAAGTTGTAGCTCTAAAGAAGCTTCATAGTTCTGAAGCAGCCAAATGGGTAGCCCTTAACGAGAGTTTTCAAAATGAGATTGAGATGCTAAAAGAGATTAGGCACAAGAACATCGTAAAGCTCCTTGGTTATTGCCTCCATAAACGTTGCATGTTTCTCATTTACGAGTACATGGAGAGTGGAAGCCTATTTTGGGTGCTAAGCAATGATACAGAAGCAGAGGAATTGAAGTGGAATAAGAGACTAAATGTCATTAATAGAGTTGCCCAAGCTTTGTCCTACCTACATCATGATTGCAATATGCCTATCATTCATCGAGACGTTACAACCAATAATATACTTTTGGACTCGAATCTTGACGCTTTTCTGCCGGATTTCGGGGTAGCAAGATTTCTTGATGTTGAATCTTCAAATCACACCGTGGTTCGCGGCACATATGGCTACATAGCTCCAGAATTGGCATACACGATGGTCGTTACAGAAAAATGTGATTGGCATTAG 516 40.5 MLPIGKVVALKKLHSSEAAKWVALNESFQNEIEMLKEIRHKNIVKLLGYCLHKRCMFLIYEYMESGSLFWVLSNDTEAEELKWNKRLNVINRVAQALSYLHHDCNMPIIHRDVTTNNILLDSNLDAFLPDFGVARFLDVESSNHTVVRGTYGYIAPELAYTMVVTEKCDWH 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10377680 10378679 + CmaCh04G019240.1 Cma04g01924 293005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01924 171 Gene3D Phosphorylase Kinase; domain 1 1 63 - -
Cma04g01924 171 Pfam Protein kinase domain 5 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01924 171 SUPERFAMILY Protein kinase-like (PK-like) 5 170 IPR011009 -
Cma04g01924 171 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 170 - -
Cma04g01924 171 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 2 170 - -
Cma04g01924 171 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01924 171 ProSitePatterns Tyrosine protein kinases specific active-site signature. 108 120 IPR008266 GO:0004672|GO:0006468
Cma04g01924 171 Gene3D Transferase(Phosphotransferase) domain 1 64 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01924 Cma-Chr4:10377680 Cma16g00195 Cma-Chr16:879759 1.51E-59 dispersed
Cma04g01923 Cma-Chr4:10359016 Cma04g01924 Cma-Chr4:10377680 1.03E-116 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68521 PF00069 Pkinase 6.90E-34 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01924 - - cmax:111490073 346.665