Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01937 ATGATCGAGCTCTCTTTGGCGCTTGGCTCAGTTGCTGAAGAAATTCTTTTGTACAGCCTAACAGATCTGCAGCTAGAGCGTGGAGCATTTCTCCATTCCGCCATGGCACTGGTGATACACGCAGGAAAGACGAATAAAAATTCTTTCAAGGCTCTCATTGCTGCAGAGTACAATGGAGTCGAAGTGAAATTGATCCCAGACTTTGAGATGGGAGTCTCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGGAAGGTTCCTGTTTTGGAAACGCCCGATGGCCCCATATTTGAGAGCAATGCGATAGCCCGTTATGTTGCACGCTTGAAGGCTGATAGTCCTCTGTTTGGTTCATCTTCGATAGATTATGGGCATATTGAACAATGGATTGATTTTGCATCATTAGAGATAGATTCTAATATTTTGACTTGGTATAGACCTAGAATTGGGAGAGCTGCTTATCTTCCACCTGTTGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCTTTGGGAGCTTTGAATACGCACCTTGCTTCAAACACATACCTAGTTGGTTATTTTGTAACATTAGCTGACATCATCATGACTTGCAACCTCTTATTGGGTTTTACTAAGTTAATGACTAGGAGCTTTACCTCAGAGTTCCCACATGTTGAGAGGTACTTCTGGACCTTAGTCAATCAACCAAACTTCAAAAAAATTCTGGGTGAGGTGAAGCAGGCAGAGTCAGTTCCACCTGTTCAATCTGCTAAGAAACCTGATGAATCTGCTAAGCAAAAGCACAAAGATGAGGTAAAGAAAGAACCTAAAAAGGAAGCAGAAAAAGAGAAGCCCAAGGCGGTAGTTGGCGAGGGAGAGGATGAGGCACCAAAGCCTAAACCCAAAAATCCTCTTGATTTGCTTCCTCCCAGTAAGATGATTCTGGATGAGTGGAAGCGGCTGTACTCGAATACCAAAACCAACTTCCGGGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGCAATTACAAGTACGACGATGAGAATACTGTTTCGTTTGTGACTTTGAACAAGGTTGGTGGCTTTCTCCAGCGGATGGATCTCGCACGTAAGTATGCTTTTGGGAAGATGTTAGTGATTGGATCCGAACCTCCATTTAAGGTGAAGGGATTGTGGCTCTTCCGTGGGCAAGAGATCCCAAAGTTCGTCCTGGACGAGTGCTATGACATGGAACTGTATGAATGGAGGAAGGTGGATATATCAGACGAGGCACAAAAGGAACGCGTGAACCAGATGATTGAAGATCATGAGCCTTTTGAAGGAGAGGCTTTGTTGGACGCCAAATGCTTCAAGTGA 1371 44.13 MIELSLALGSVAEEILLYSLTDLQLERGAFLHSAMALVIHAGKTNKNSFKALIAAEYNGVEVKLIPDFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVARLKADSPLFGSSSIDYGHIEQWIDFASLEIDSNILTWYRPRIGRAAYLPPVEEAAIAALKRALGALNTHLASNTYLVGYFVTLADIIMTCNLLLGFTKLMTRSFTSEFPHVERYFWTLVNQPNFKKILGEVKQAESVPPVQSAKKPDESAKQKHKDEVKKEPKKEAEKEKPKAVVGEGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCNYKYDDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDHEPFEGEALLDAKCFK 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10560539 10564288 - CmaCh04G019370.1 Cma04g01937 293018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01937 456 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 35 456 IPR044628 GO:0004364
Cma04g01937 456 MobiDBLite consensus disorder prediction 245 303 - -
Cma04g01937 456 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 35 116 IPR004045 -
Cma04g01937 456 SUPERFAMILY eEF1-gamma domain 296 456 IPR036433 GO:0003746|GO:0006414
Cma04g01937 456 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 121 249 IPR010987 -
Cma04g01937 456 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 296 456 IPR001662 GO:0003746|GO:0006414
Cma04g01937 456 SMART EF1G_2 295 403 IPR001662 GO:0003746|GO:0006414
Cma04g01937 456 CDD GST_N_EF1Bgamma 37 111 - -
Cma04g01937 456 MobiDBLite consensus disorder prediction 255 296 - -
Cma04g01937 456 Gene3D Glutaredoxin 34 108 - -
Cma04g01937 456 Gene3D - 114 251 - -
Cma04g01937 456 SFLD Glutathione Transferase (cytosolic) 40 224 IPR040079 -
Cma04g01937 456 Pfam Glutathione S-transferase, N-terminal domain 45 110 IPR004045 -
Cma04g01937 456 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 296 456 IPR036433 GO:0003746|GO:0006414
Cma04g01937 456 Pfam Glutathione S-transferase, C-terminal domain 162 231 IPR004046 -
Cma04g01937 456 PANTHER - 35 456 - -
Cma04g01937 456 Pfam Elongation factor 1 gamma, conserved domain 295 403 IPR001662 GO:0003746|GO:0006414
Cma04g01937 456 SUPERFAMILY GST C-terminal domain-like 107 248 IPR036282 -
Cma04g01937 456 CDD GST_C_EF1Bgamma_like 124 244 - -
Cma04g01937 456 SFLD Main (cytGST) 40 224 - -
Cma04g01937 456 SUPERFAMILY Thioredoxin-like 33 118 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00892 Cma-Chr4:4645427 Cma04g01937 Cma-Chr4:10560539 0 dispersed
Cma04g01937 Cma-Chr4:10560539 Cma06g00887 Cma-Chr6:5603706 0 dispersed
Cma04g01937 Cma-Chr4:10560539 Cma16g00767 Cma-Chr16:4206363 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01937 K03233 - zju:107412556 705.671