Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01937 | ATGATCGAGCTCTCTTTGGCGCTTGGCTCAGTTGCTGAAGAAATTCTTTTGTACAGCCTAACAGATCTGCAGCTAGAGCGTGGAGCATTTCTCCATTCCGCCATGGCACTGGTGATACACGCAGGAAAGACGAATAAAAATTCTTTCAAGGCTCTCATTGCTGCAGAGTACAATGGAGTCGAAGTGAAATTGATCCCAGACTTTGAGATGGGAGTCTCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGGAAGGTTCCTGTTTTGGAAACGCCCGATGGCCCCATATTTGAGAGCAATGCGATAGCCCGTTATGTTGCACGCTTGAAGGCTGATAGTCCTCTGTTTGGTTCATCTTCGATAGATTATGGGCATATTGAACAATGGATTGATTTTGCATCATTAGAGATAGATTCTAATATTTTGACTTGGTATAGACCTAGAATTGGGAGAGCTGCTTATCTTCCACCTGTTGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCTTTGGGAGCTTTGAATACGCACCTTGCTTCAAACACATACCTAGTTGGTTATTTTGTAACATTAGCTGACATCATCATGACTTGCAACCTCTTATTGGGTTTTACTAAGTTAATGACTAGGAGCTTTACCTCAGAGTTCCCACATGTTGAGAGGTACTTCTGGACCTTAGTCAATCAACCAAACTTCAAAAAAATTCTGGGTGAGGTGAAGCAGGCAGAGTCAGTTCCACCTGTTCAATCTGCTAAGAAACCTGATGAATCTGCTAAGCAAAAGCACAAAGATGAGGTAAAGAAAGAACCTAAAAAGGAAGCAGAAAAAGAGAAGCCCAAGGCGGTAGTTGGCGAGGGAGAGGATGAGGCACCAAAGCCTAAACCCAAAAATCCTCTTGATTTGCTTCCTCCCAGTAAGATGATTCTGGATGAGTGGAAGCGGCTGTACTCGAATACCAAAACCAACTTCCGGGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGCAATTACAAGTACGACGATGAGAATACTGTTTCGTTTGTGACTTTGAACAAGGTTGGTGGCTTTCTCCAGCGGATGGATCTCGCACGTAAGTATGCTTTTGGGAAGATGTTAGTGATTGGATCCGAACCTCCATTTAAGGTGAAGGGATTGTGGCTCTTCCGTGGGCAAGAGATCCCAAAGTTCGTCCTGGACGAGTGCTATGACATGGAACTGTATGAATGGAGGAAGGTGGATATATCAGACGAGGCACAAAAGGAACGCGTGAACCAGATGATTGAAGATCATGAGCCTTTTGAAGGAGAGGCTTTGTTGGACGCCAAATGCTTCAAGTGA | 1371 | 44.13 | MIELSLALGSVAEEILLYSLTDLQLERGAFLHSAMALVIHAGKTNKNSFKALIAAEYNGVEVKLIPDFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVARLKADSPLFGSSSIDYGHIEQWIDFASLEIDSNILTWYRPRIGRAAYLPPVEEAAIAALKRALGALNTHLASNTYLVGYFVTLADIIMTCNLLLGFTKLMTRSFTSEFPHVERYFWTLVNQPNFKKILGEVKQAESVPPVQSAKKPDESAKQKHKDEVKKEPKKEAEKEKPKAVVGEGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCNYKYDDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDHEPFEGEALLDAKCFK | 456 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10560539 | 10564288 | - | CmaCh04G019370.1 | Cma04g01937 | 293018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01937 | 456 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 35 | 456 | IPR044628 | GO:0004364 | |
Cma04g01937 | 456 | MobiDBLite | consensus disorder prediction | 245 | 303 | - | - | |
Cma04g01937 | 456 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 35 | 116 | IPR004045 | - | |
Cma04g01937 | 456 | SUPERFAMILY | eEF1-gamma domain | 296 | 456 | IPR036433 | GO:0003746|GO:0006414 | |
Cma04g01937 | 456 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 121 | 249 | IPR010987 | - | |
Cma04g01937 | 456 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 296 | 456 | IPR001662 | GO:0003746|GO:0006414 | |
Cma04g01937 | 456 | SMART | EF1G_2 | 295 | 403 | IPR001662 | GO:0003746|GO:0006414 | |
Cma04g01937 | 456 | CDD | GST_N_EF1Bgamma | 37 | 111 | - | - | |
Cma04g01937 | 456 | MobiDBLite | consensus disorder prediction | 255 | 296 | - | - | |
Cma04g01937 | 456 | Gene3D | Glutaredoxin | 34 | 108 | - | - | |
Cma04g01937 | 456 | Gene3D | - | 114 | 251 | - | - | |
Cma04g01937 | 456 | SFLD | Glutathione Transferase (cytosolic) | 40 | 224 | IPR040079 | - | |
Cma04g01937 | 456 | Pfam | Glutathione S-transferase, N-terminal domain | 45 | 110 | IPR004045 | - | |
Cma04g01937 | 456 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 296 | 456 | IPR036433 | GO:0003746|GO:0006414 | |
Cma04g01937 | 456 | Pfam | Glutathione S-transferase, C-terminal domain | 162 | 231 | IPR004046 | - | |
Cma04g01937 | 456 | PANTHER | - | 35 | 456 | - | - | |
Cma04g01937 | 456 | Pfam | Elongation factor 1 gamma, conserved domain | 295 | 403 | IPR001662 | GO:0003746|GO:0006414 | |
Cma04g01937 | 456 | SUPERFAMILY | GST C-terminal domain-like | 107 | 248 | IPR036282 | - | |
Cma04g01937 | 456 | CDD | GST_C_EF1Bgamma_like | 124 | 244 | - | - | |
Cma04g01937 | 456 | SFLD | Main (cytGST) | 40 | 224 | - | - | |
Cma04g01937 | 456 | SUPERFAMILY | Thioredoxin-like | 33 | 118 | IPR036249 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00892 | Cma-Chr4:4645427 | Cma04g01937 | Cma-Chr4:10560539 | 0 | dispersed | |
Cma04g01937 | Cma-Chr4:10560539 | Cma06g00887 | Cma-Chr6:5603706 | 0 | dispersed | |
Cma04g01937 | Cma-Chr4:10560539 | Cma16g00767 | Cma-Chr16:4206363 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01937 | K03233 | - | zju:107412556 | 705.671 |