Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01952 ATGGTGGAACAAGATGCCAAGCGACAGCCGAAGGCTACAAACATTATGGCAAGTAAAACCCAGTTGCCTTGCGACGGCGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCCGACTTGGAGACAATCACATGCAAAACTTGCGTCACCCCTTGGCACGTCGATTGTCTCTCAAGTCCCCCTGAAACCCTGGCATCAACCCTTCAATGGGACTGTCCCGATTGTTCCTCCCCTCCCGAAGATGTTCCCCTTCCTCCGATCGGCAACAATCCACTCCCTACTACGCCTTCTAGTGACCTTGTTGCTGCGATTCGAGCCATTGAGGCTGATGTCTCCCTTACTGACCGTGAGAAGGCAAAGAAGCGCCAGGAGCTTCTCAGCGGAAAGATGCAGTCCGACAAGGATGATCATGATGCCAACAAGGAAAAGAAAAAAAAGGGGGACGATGTTTTGGATTTGTTGGACGAGAGATTGAACTGCTCGTTCTGCATGCAATTACCAGAAAGGCCAGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTTATACCTTCCAAAATGGCTAGCCAGCCCCGTATAAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTAGTTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGACAAAGCCTATACCACTGACCGGGCACAAAGAAATGGGAAGGCTAATGCTGCCAGTGGAAAAATATTTGTTACAATTCCAACTGATCATTTTGGTCCCATTCCTGCTGAAAATGATCCCGAGAGAAACCAGGGTGTTCTGGTCGGTGAATGCTGGGAGGATCGGTTAGAATGTCGTCAATGGGGTGCTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAATAATGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATCAAACCAAGCGCTACAAGTTAGTTGCTTGAAGGGCTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGGTATGATGGAATTTATAAGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTCAAGGTATGTCGCTATTTATTTGTTAGATGCGACAATGAGCCTGCTCCATGGACAAGTGATGAACATGGAGATCGACCTAGACCCTTACCTAAAATTTCAGAGTTGAAAAAAGCGACGGATATTACGGAGAGGAAGGGAGGTTCCTCATGGGACTTTGATGAGAGCGATAGTCGATGGAAGTGGAGCAAAGCTCCACCAACGAGCAAGAGACCAGTTGAAGCCGAAGATTCTGCTTCTGGGAAGAGGAGAAAAATTAGGCAATCGCGTAACATGAGTGTCCGAGAAAGGTTACTAAAAGAGTTTAGCTGCCGTATTTGCCGGGAGGCGATGAGTTTGCCAATTACAACACCTTGTGCCCATAACTTCTGCAAGCCATGCTTGGAAGGTGTTTTTGTGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGCGGACGGGCTCTTAGATCCCAAAAGAATGTCATGAATTGTCCTTGTTGCCCCACCGATATATCTGATTTTCTACAAAATATTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCACTGAAAAGTAAGATTGAAGAAGGGGATGCATCTGAGAAGCTCTGTGAAGAAGTGATAGATGGGGAAGAGGAGGGAAAAGATGGAAGCAATGGGAATGAAAGCAGCAGTTCAGTAGAAACAACAAGAAAGCGAGCAAAGGTGTATGATTTGGAATGA 1983 46.34 MVEQDAKRQPKATNIMASKTQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVDCLSSPPETLASTLQWDCPDCSSPPEDVPLPPIGNNPLPTTPSSDLVAAIRAIEADVSLTDREKAKKRQELLSGKMQSDKDDHDANKEKKKKGDDVLDLLDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSLVSGGPQKVYHFVHNQNRPDKAYTTDRAQRNGKANAASGKIFVTIPTDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNQALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYKIEKCWRKVGIQGFKVCRYLFVRCDNEPAPWTSDEHGDRPRPLPKISELKKATDITERKGGSSWDFDESDSRWKWSKAPPTSKRPVEAEDSASGKRRKIRQSRNMSVRERLLKEFSCRICREAMSLPITTPCAHNFCKPCLEGVFVGKTFLRERSSGGRALRSQKNVMNCPCCPTDISDFLQNIQVNRELLDVIESLKSKIEEGDASEKLCEEVIDGEEEGKDGSNGNESSSSVETTRKRAKVYDLE 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10853398 10859021 - CmaCh04G019520.1 Cma04g01952 293033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01952 660 SMART G9a_1 283 440 IPR003105 -
Cma04g01952 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 77 IPR013083 -
Cma04g01952 660 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 16 636 - -
Cma04g01952 660 SUPERFAMILY PUA domain-like 262 456 IPR015947 -
Cma04g01952 660 ProSiteProfiles Zinc finger PHD-type profile. 27 78 IPR019787 -
Cma04g01952 660 CDD RING-HC 160 198 - -
Cma04g01952 660 MobiDBLite consensus disorder prediction 616 660 - -
Cma04g01952 660 Pfam SAD/SRA domain 291 439 IPR003105 -
Cma04g01952 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 227 IPR013083 -
Cma04g01952 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 617 IPR013083 -
Cma04g01952 660 Pfam RING-type zinc-finger 530 570 IPR027370 -
Cma04g01952 660 MobiDBLite consensus disorder prediction 123 148 - -
Cma04g01952 660 Gene3D - 259 455 IPR036987 -
Cma04g01952 660 ProSitePatterns Zinc finger RING-type signature. 545 554 IPR017907 -
Cma04g01952 660 MobiDBLite consensus disorder prediction 444 516 - -
Cma04g01952 660 Pfam Zinc finger, C3HC4 type (RING finger) 160 198 IPR018957 GO:0046872
Cma04g01952 660 ProSiteProfiles Zinc finger RING-type profile. 530 586 IPR001841 -
Cma04g01952 660 SUPERFAMILY FYVE/PHD zinc finger 21 83 IPR011011 -
Cma04g01952 660 SUPERFAMILY RING/U-box 151 206 - -
Cma04g01952 660 ProSiteProfiles Zinc finger RING-type profile. 160 199 IPR001841 -
Cma04g01952 660 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 16 636 IPR045134 -
Cma04g01952 660 SMART PHD_3 29 76 IPR001965 -
Cma04g01952 660 MobiDBLite consensus disorder prediction 444 487 - -
Cma04g01952 660 SMART ring_2 160 198 IPR001841 -
Cma04g01952 660 SMART ring_2 530 586 IPR001841 -
Cma04g01952 660 ProSitePatterns Zinc finger PHD-type signature. 30 75 IPR019786 -
Cma04g01952 660 SUPERFAMILY RING/U-box 523 611 - -
Cma04g01952 660 ProSiteProfiles YDG domain profile. 288 436 IPR003105 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01952 Cma-Chr4:10853398 Cma06g01287 Cma-Chr6:8560075 8.76E-22 dispersed
Cma04g01952 Cma-Chr4:10853398 Cma11g00004 Cma-Chr11:21237 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01952 K10638 - csv:116401648 1134.78