Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01995 ATGGCTTCAGATGCTGGTTCTAAGGCGACTTCTGCTGCCGATTCCTACCTTGGAAGCTTCATAACTTTGACTTCCAAGAGTGAAATTAGATACGAAGGCGTTCTGTACAACATCAACACGGAAGAGTCCAGTATTGGACTGAGAAACGTGAGATCCTTTGGAACAGAAGGAAGAAAGAAGGATGGTCCCCAAGTCCCTCCAAGCGATAAATTTTTTGAGTACATCTTATTCCGTGGGAGTGATATCAAGGATTTGCAGGTTAAATGTTCTCCACCTGCTCAGCCGACAGCACCTATAAATAATGATCCAGCAATTATTCAATCTCACTACCCCGCCTCAGTTTCCCCATCTACCAGCATGCATTCTGTCGCCAGTGGGTCATTACCTGATCATACTTCCCACACGGCATTTGGATTCCCTCCGTCTAATTTTCAAGGTGGTTTGCCTCCGTATCAACCTGGAGGCAACTTGGGGTCATGGGCAGCTTCTCCTCCGCCTCCTCCTAGTTCAGATGGCAGTGGACTTGCCATGCCCTTGTATTGGCAAGGGTATTATGGCCCACCAAATGGGCTTCCTCAGTTACACCAGCAGTCGATAATACGTCCTCCTGGTCTATCAATACCTTCATCCATGCAACAGTCAATGCAGTATCTGGACATTAATGCATCTTTACCCATTGGAGCTTCAAAACAACCAGAAGCTCCGTCTTCCTTGCCCCCTGCTAGTAATAGTTCTCCTAACTTGACCTCCACTGCTCTGCCTCCAACTTTTTCATCAGCTTTGCCAATGTTCCCCTTTGTTTCTATTTCTGAAACGATACCAAGTTCAGTTGCTAATAAGACAAATGTTGCTACCCTTCCCGGATCCCCTGTCAGTGTTAGTTTGCCAGTAGGTCCGATACTGTCTTCATTTTCTACTTCAAGTGCGGATGTCAGTTCTGCCATACCGCCAATCACTAATGAACCCATTGCAGTTTCTGGTCCTTCATTACTGTATCAAAGTGCGTCCCAGTCAACTTCATCTGTAGTTGGAATATCTAACTCTCGCACAGAATCTTCTACACCTTCTCTAGTTACCCCTGGGCAGCTATTGCAGTCTGCGCCCACTGCTGTGGTTCCATCCCAATCTTCACATACAGTGCATAAGGATGTGGAAGTGGTCCAGTCATCATCGTTAAAACCTTCTATGCCAGTGACAACAGAGACTCAGCCACCAATATTACCACTACCTGTACAGTCAAGGCCTGTCCAGAAGTCAAATGGTGCTCATTTTCAGGCTCGGCATTTTTACAGAGGACGTGAAAGAGGAAGAGGCTCTGGGAAGAGTTCCCGTCCTGTGACCAAATTTACCGAAGATTTTGATTTCATAGCAATGAACGAGAAATTTAACAAGGATGAAGTTTGGGGAAGTCTAGGTAAAGGGAGTAAATCTTATCTCAAGGATAAGGATGTGGATGGAACGGTTAGTGATGAGGATGACGCTCGGGAAGAAGACGAGGGTGAACTCTCACAGGCTGGGATCAAGCCCTTGTATAACAAGGATGACTTCTTTGATTCACTCTCTTATAACGCTATGGATAATGATCCTCAAAATGGTCGGACGAGATATTCAGAGCAAGTAAAGATAGACACAGAGACTTTTGGCCACTTTTCGAGGTATCGGGGAGGCCGAGGTGGCCAAGGTCCTGGACGTGGAGGGTATTTTCGTGGAGGTTACCATGGAAGAGGATATGGCTATAATGGGAGGGGTTGGGGGCGGGGGCGAGGGAGAGGGCGGGGGCGATCATCATTTAATCATTCATAG 1803 46.76 MASDAGSKATSAADSYLGSFITLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKFFEYILFRGSDIKDLQVKCSPPAQPTAPINNDPAIIQSHYPASVSPSTSMHSVASGSLPDHTSHTAFGFPPSNFQGGLPPYQPGGNLGSWAASPPPPPSSDGSGLAMPLYWQGYYGPPNGLPQLHQQSIIRPPGLSIPSSMQQSMQYLDINASLPIGASKQPEAPSSLPPASNSSPNLTSTALPPTFSSALPMFPFVSISETIPSSVANKTNVATLPGSPVSVSLPVGPILSSFSTSSADVSSAIPPITNEPIAVSGPSLLYQSASQSTSSVVGISNSRTESSTPSLVTPGQLLQSAPTAVVPSQSSHTVHKDVEVVQSSSLKPSMPVTTETQPPILPLPVQSRPVQKSNGAHFQARHFYRGRERGRGSGKSSRPVTKFTEDFDFIAMNEKFNKDEVWGSLGKGSKSYLKDKDVDGTVSDEDDAREEDEGELSQAGIKPLYNKDDFFDSLSYNAMDNDPQNGRTRYSEQVKIDTETFGHFSRYRGGRGGQGPGRGGYFRGGYHGRGYGYNGRGWGRGRGRGRGRSSFNHS 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11985199 11991776 + CmaCh04G019950.1 Cma04g01995 293076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01995 600 CDD LSm14_N 13 87 IPR025609 -
Cma04g01995 600 MobiDBLite consensus disorder prediction 235 250 - -
Cma04g01995 600 MobiDBLite consensus disorder prediction 226 250 - -
Cma04g01995 600 SMART LSM14_2 10 110 IPR025609 -
Cma04g01995 600 MobiDBLite consensus disorder prediction 579 600 - -
Cma04g01995 600 MobiDBLite consensus disorder prediction 116 135 - -
Cma04g01995 600 Pfam Scd6-like Sm domain 16 87 IPR025609 -
Cma04g01995 600 ProSiteProfiles DFDF domain profile. 441 477 IPR025762 -
Cma04g01995 600 SUPERFAMILY Sm-like ribonucleoproteins 15 90 IPR010920 -
Cma04g01995 600 Pfam FDF domain 448 550 IPR019050 -
Cma04g01995 600 MobiDBLite consensus disorder prediction 142 173 - -
Cma04g01995 600 ProSiteProfiles TFG box profile. 531 551 IPR025768 -
Cma04g01995 600 PANTHER PROTEIN DECAPPING 5-LIKE 5 585 - -
Cma04g01995 600 PANTHER SCD6 PROTEIN-RELATED 5 585 - -
Cma04g01995 600 SMART FDF_2 447 551 IPR019050 -
Cma04g01995 600 MobiDBLite consensus disorder prediction 391 422 - -
Cma04g01995 600 ProSiteProfiles FFD box profile. 509 524 IPR025761 -
Cma04g01995 600 MobiDBLite consensus disorder prediction 479 505 - -
Cma04g01995 600 Gene3D - 6 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01995 K18749 LSM14, RAP55, SCD6; protein LSM14 - csv:101215778 854.744
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01357 Cma-Chr1:9668432 Cma04g01995 Cma-Chr4:11985199 1.05E-11 dispersed
Cma04g01995 Cma-Chr4:11985199 Cma18g01050 Cma-Chr18:8736623 1.28E-170 dispersed
Cma04g01995 Cma-Chr4:11985199 Cma15g01419 Cma-Chr15:8960673 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g247 Blo01g00476 . . . . . Bma14g01693 . Cmo04g01615 Cmo18g01071 . . Car04g01593 . Sed06g1855 Cpe09g00267 Cpe01g01755 Bhi07g01381 Tan04g0909 Cmetu10g0348 Lac13g0448 Hepe10g1862 . . Cla05g02337 Cam05g2511 Cec05g2535 Cco05g2578 Clacu05g2505 Cmu05g2367 Cre05g2484 Cone13ag0863 Cone19ag0863 . . Lsi04g00298 Csa05g02074 . Cme10g00301 . Blo11g00828 . . Bpe11g01686 . . . . . . Cma04g01995 . . Car15g01281 Cpe13g00029 . Bhi12g00822 . . . . . Lcy10g0875 Cla01g00562 Cam01g0585 Cec01g0577 Cco01g0601 Clacu01g0580 Cmu01g0551 Cre09g1956 Lsi09g00611 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001922 1 2 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 1 2 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01995 Cma_Chr04 FPKM 8.896338 10.339614 4.758481 3.962992 14.196879 13.447356 14.671257 1.26883 1.504982 1.662855