Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02004 | ATGAAGGAGGAAGGAGAGTGCTTTCAGGGGTTTCAAGAGCACCTCCTAATGCAACAATTCCAGACTATGCAACAAAACAGCGACGTTTTTGGAGTAGGAGGTGGAGGAGGCTTGATTTTTCCTGAAGTTTCTCCTATGATGTTTACGCCTCCGTGGACCGCGACCACAACCATCCCTCAAGTCCACCACGACCCCTTCATCCCGCCGCCGCCCCCACCTTCCTACGCCAGTTTCTTCAATAGGAGAAATGCTTCTCTGCAGTTCCCTTACGATATTGGGAACAATAGCCTTGGAATTGGGCAGATGGGTCAGCCTGGGTCTGGCCCCTTTGGGCTGCAGGCCGAGCTGAGTAAGATGAGCCCTCAAGAAATAATGGACGCCAAAGCTCTTGCTGCCTCTAAAAGCCATAGTGAAGCTGAGAGACGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAGTACCACCAAAACGGACAAGGCATCCTTGCTTGCAGAGGTAATTCAACATGTAAAAGAGCTGAAACGCCAGACGACATTGATAGCTGATGTAAGTCCAGTTCCGACCGAGCTCGATGAGCTATCAGTTGACGTCGATGCATCGGACGAGGACGGTAAGTTCGTGATAAAAGCCTCACTTTGTTGTGAGGACAGGTCTGATCTTCTCCCACAGATCATTAAAACCCTGAAATCCCTCCGCTTGAGAACCCTAAAAGCGGAGATCACGACGCTGGGCGGCCGAGTAAAGAACGTGTTGTTTATCACCGGGGACGACGACTCCTCCAGCGACCAAGAGGAGCCTGAACAGCAGCACCACCAATACAGCATCAGTTCCATTCAGGAAGCCCTAAAGGGCGTGATGGAAAAGGTTTGTAGCGAAGACCAATCATCCTCAGGCAGCATCAAAAGGCAAAGGACCAATAATCACAACAACGTCAATATTTAG | 963 | 49.64 | MKEEGECFQGFQEHLLMQQFQTMQQNSDVFGVGGGGGLIFPEVSPMMFTPPWTATTTIPQVHHDPFIPPPPPPSYASFFNRRNASLQFPYDIGNNSLGIGQMGQPGSGPFGLQAELSKMSPQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDDDSSSDQEEPEQQHHQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNVNI | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12357179 | 12359087 | + | CmaCh04G020040.1 | Cma04g02004 | 293085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02004 | 320 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 54 | 318 | - | - | |
Cma04g02004 | 320 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 54 | 318 | IPR045847 | GO:0003700|GO:0006355 | |
Cma04g02004 | 320 | CDD | bHLH_AtAIG1_like | 126 | 205 | - | - | |
Cma04g02004 | 320 | Gene3D | - | 125 | 188 | IPR036638 | GO:0046983 | |
Cma04g02004 | 320 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 131 | 180 | IPR011598 | GO:0046983 | |
Cma04g02004 | 320 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 135 | 185 | IPR036638 | GO:0046983 | |
Cma04g02004 | 320 | Pfam | Helix-loop-helix DNA-binding domain | 134 | 180 | IPR011598 | GO:0046983 | |
Cma04g02004 | 320 | SMART | finulus | 137 | 186 | IPR011598 | GO:0046983 | |
Cma04g02004 | 320 | MobiDBLite | consensus disorder prediction | 297 | 320 | - | - | |
Cma04g02004 | 320 | MobiDBLite | consensus disorder prediction | 294 | 320 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02004 | Cma18g01047 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01537 | Cma-Chr4:7789674 | Cma04g02004 | Cma-Chr4:12357179 | 1.86E-107 | dispersed | |
Cma04g02004 | Cma-Chr4:12357179 | Cma05g00548 | Cma-Chr5:2680552 | 7.98E-37 | dispersed | |
Cma06g00876 | Cma-Chr6:5372952 | Cma04g02004 | Cma-Chr4:12357179 | 1.20E-46 | transposed | |
Cma18g01047 | Cma-Chr18:8715387 | Cma04g02004 | Cma-Chr4:12357179 | 6.13E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34914 | PF00010 | HLH | 1.50E-12 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02004 | - | - | pvy:116145962 | 356.681 |