Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02004 ATGAAGGAGGAAGGAGAGTGCTTTCAGGGGTTTCAAGAGCACCTCCTAATGCAACAATTCCAGACTATGCAACAAAACAGCGACGTTTTTGGAGTAGGAGGTGGAGGAGGCTTGATTTTTCCTGAAGTTTCTCCTATGATGTTTACGCCTCCGTGGACCGCGACCACAACCATCCCTCAAGTCCACCACGACCCCTTCATCCCGCCGCCGCCCCCACCTTCCTACGCCAGTTTCTTCAATAGGAGAAATGCTTCTCTGCAGTTCCCTTACGATATTGGGAACAATAGCCTTGGAATTGGGCAGATGGGTCAGCCTGGGTCTGGCCCCTTTGGGCTGCAGGCCGAGCTGAGTAAGATGAGCCCTCAAGAAATAATGGACGCCAAAGCTCTTGCTGCCTCTAAAAGCCATAGTGAAGCTGAGAGACGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAGTACCACCAAAACGGACAAGGCATCCTTGCTTGCAGAGGTAATTCAACATGTAAAAGAGCTGAAACGCCAGACGACATTGATAGCTGATGTAAGTCCAGTTCCGACCGAGCTCGATGAGCTATCAGTTGACGTCGATGCATCGGACGAGGACGGTAAGTTCGTGATAAAAGCCTCACTTTGTTGTGAGGACAGGTCTGATCTTCTCCCACAGATCATTAAAACCCTGAAATCCCTCCGCTTGAGAACCCTAAAAGCGGAGATCACGACGCTGGGCGGCCGAGTAAAGAACGTGTTGTTTATCACCGGGGACGACGACTCCTCCAGCGACCAAGAGGAGCCTGAACAGCAGCACCACCAATACAGCATCAGTTCCATTCAGGAAGCCCTAAAGGGCGTGATGGAAAAGGTTTGTAGCGAAGACCAATCATCCTCAGGCAGCATCAAAAGGCAAAGGACCAATAATCACAACAACGTCAATATTTAG 963 49.64 MKEEGECFQGFQEHLLMQQFQTMQQNSDVFGVGGGGGLIFPEVSPMMFTPPWTATTTIPQVHHDPFIPPPPPPSYASFFNRRNASLQFPYDIGNNSLGIGQMGQPGSGPFGLQAELSKMSPQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDDDSSSDQEEPEQQHHQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNVNI 320
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 12357179 12359087 + CmaCh04G020040.1 Cma04g02004 293085
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02004 320 PANTHER TRANSCRIPTION FACTOR BHLH30 54 318 - -
Cma04g02004 320 PANTHER TRANSCRIPTION FACTOR BHLH30 54 318 IPR045847 GO:0003700|GO:0006355
Cma04g02004 320 CDD bHLH_AtAIG1_like 126 205 - -
Cma04g02004 320 Gene3D - 125 188 IPR036638 GO:0046983
Cma04g02004 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Cma04g02004 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 185 IPR036638 GO:0046983
Cma04g02004 320 Pfam Helix-loop-helix DNA-binding domain 134 180 IPR011598 GO:0046983
Cma04g02004 320 SMART finulus 137 186 IPR011598 GO:0046983
Cma04g02004 320 MobiDBLite consensus disorder prediction 297 320 - -
Cma04g02004 320 MobiDBLite consensus disorder prediction 294 320 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma04g02004 Cma18g01047 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01537 Cma-Chr4:7789674 Cma04g02004 Cma-Chr4:12357179 1.86E-107 dispersed
Cma04g02004 Cma-Chr4:12357179 Cma05g00548 Cma-Chr5:2680552 7.98E-37 dispersed
Cma06g00876 Cma-Chr6:5372952 Cma04g02004 Cma-Chr4:12357179 1.20E-46 transposed
Cma18g01047 Cma-Chr18:8715387 Cma04g02004 Cma-Chr4:12357179 6.13E-111 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34914 PF00010 HLH 1.50E-12 No_clan Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02004 - - pvy:116145962 356.681