Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02006 ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTCTGGCAGCCCATGGTTTTCTTTTTTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGGTTGTCTTTTCACCCCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAACTTAATTTTACTGCAGTTATAGATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGATAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCCTACTGCCTGGAGATGAAGAAGACAACGTAAGCGATGAAGTTATATGGGAAACGCTTCCTCACTTCTGGGTCTCAATCTCCATGGTTTTCTTCATCGCTGCAACCCTTTTCACTCTTCTTAAGCTTAGTGGTCTAGGTCCATTAATTGCTCACCATCTTGACTTTCTGATTGTTATTTTTATGGCTATACTTTACAAGACCCTTTATACTAAAGATCTCTGGATTATAGCCGAATGCTTTGCATTTCTTGTCTGCACGAAGTGGTATAATCCTATGATTCATAGGCACTCTCTTGTTAGAGAATCCAGTTCCTCTTCGCTGACCATTAGATACCTTGACTGGGATAGAGGTGTGGTTGTTTCCTCTGATGAGGCTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATCATGAAGGTTCCTTTAATCATTTTCCAAATCATGCTTTTTATGCGCTTAGAGGGAACACCTAGGAGTGCTTCCTATATTCCTTGTCTGGTTCTGTTCTCTCCTCTTTTCTTATTGCAAGGGGTGGGTTCAGTATTTGCGGCATATAGGTTGCTAGGTTGGTGGTCAATTGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTCTATTCTGCTGGAAATTCTGGGTATGATACTTTCACACCAGAGACTGTAAAGAAAAGGACCAAATCCAATCTAGTTGATGAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGCCAGGAGCACGAAAAACTTCTATATGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATTGATATGGTTCTTCTTCCGTGTAGGCATCACATTCTTTGCAGCTCTTGTAGTGAGAAGTGTAATCGTTGCCCAATCTGTCGGGAATCGATCGAAGAACGGCTGCCTGTAAATGATGTTTAG 1323 42.71 MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTAVIDLKIVFVPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPLIAHHLDFLIVIFMAILYKTLYTKDLWIIAECFAFLVCTKWYNPMIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEAQPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSASYIPCLVLFSPLFLLQGVGSVFAAYRLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIEERLPVNDV 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12411883 12420824 + CmaCh04G020060.1 Cma04g02006 293087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02006 440 ProSiteProfiles Zinc finger RING-type profile. 393 428 IPR001841 -
Cma04g02006 440 Pfam Transmembrane Fragile-X-F protein 35 305 IPR019396 -
Cma04g02006 440 SUPERFAMILY RING/U-box 383 434 - -
Cma04g02006 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 367 437 IPR013083 -
Cma04g02006 440 Pfam Zinc finger, C3HC4 type (RING finger) 391 433 - -
Cma04g02006 440 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 316 440 - -
Cma04g02006 440 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 4 318 - -
Cma04g02006 440 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 316 440 - -
Cma04g02006 440 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 4 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02006 Cma-Chr4:12411883 Cma10g00248 Cma-Chr10:1102128 5.27E-160 dispersed
Cma04g02006 Cma-Chr4:12411883 Cma11g00257 Cma-Chr11:1304803 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02006 - - vvi:100249082 580.867