Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02006 | ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTCTGGCAGCCCATGGTTTTCTTTTTTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGGTTGTCTTTTCACCCCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAACTTAATTTTACTGCAGTTATAGATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGATAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCCTACTGCCTGGAGATGAAGAAGACAACGTAAGCGATGAAGTTATATGGGAAACGCTTCCTCACTTCTGGGTCTCAATCTCCATGGTTTTCTTCATCGCTGCAACCCTTTTCACTCTTCTTAAGCTTAGTGGTCTAGGTCCATTAATTGCTCACCATCTTGACTTTCTGATTGTTATTTTTATGGCTATACTTTACAAGACCCTTTATACTAAAGATCTCTGGATTATAGCCGAATGCTTTGCATTTCTTGTCTGCACGAAGTGGTATAATCCTATGATTCATAGGCACTCTCTTGTTAGAGAATCCAGTTCCTCTTCGCTGACCATTAGATACCTTGACTGGGATAGAGGTGTGGTTGTTTCCTCTGATGAGGCTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATCATGAAGGTTCCTTTAATCATTTTCCAAATCATGCTTTTTATGCGCTTAGAGGGAACACCTAGGAGTGCTTCCTATATTCCTTGTCTGGTTCTGTTCTCTCCTCTTTTCTTATTGCAAGGGGTGGGTTCAGTATTTGCGGCATATAGGTTGCTAGGTTGGTGGTCAATTGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTCTATTCTGCTGGAAATTCTGGGTATGATACTTTCACACCAGAGACTGTAAAGAAAAGGACCAAATCCAATCTAGTTGATGAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGCCAGGAGCACGAAAAACTTCTATATGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATTGATATGGTTCTTCTTCCGTGTAGGCATCACATTCTTTGCAGCTCTTGTAGTGAGAAGTGTAATCGTTGCCCAATCTGTCGGGAATCGATCGAAGAACGGCTGCCTGTAAATGATGTTTAG | 1323 | 42.71 | MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTAVIDLKIVFVPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPLIAHHLDFLIVIFMAILYKTLYTKDLWIIAECFAFLVCTKWYNPMIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEAQPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSASYIPCLVLFSPLFLLQGVGSVFAAYRLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIEERLPVNDV | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12411883 | 12420824 | + | CmaCh04G020060.1 | Cma04g02006 | 293087 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02006 | 440 | ProSiteProfiles | Zinc finger RING-type profile. | 393 | 428 | IPR001841 | - | |
Cma04g02006 | 440 | Pfam | Transmembrane Fragile-X-F protein | 35 | 305 | IPR019396 | - | |
Cma04g02006 | 440 | SUPERFAMILY | RING/U-box | 383 | 434 | - | - | |
Cma04g02006 | 440 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 367 | 437 | IPR013083 | - | |
Cma04g02006 | 440 | Pfam | Zinc finger, C3HC4 type (RING finger) | 391 | 433 | - | - | |
Cma04g02006 | 440 | PANTHER | TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN | 316 | 440 | - | - | |
Cma04g02006 | 440 | PANTHER | TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN | 4 | 318 | - | - | |
Cma04g02006 | 440 | PANTHER | TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN | 316 | 440 | - | - | |
Cma04g02006 | 440 | PANTHER | TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN | 4 | 318 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02006 | Cma-Chr4:12411883 | Cma10g00248 | Cma-Chr10:1102128 | 5.27E-160 | dispersed | |
Cma04g02006 | Cma-Chr4:12411883 | Cma11g00257 | Cma-Chr11:1304803 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02006 | - | - | vvi:100249082 | 580.867 |