Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02007 ATGGCCGCCGCCGTTGCTGCAGCAGGTGGGGTTAGCATTGGAGTCTCAAAGCTCCAGCCGCGCCATTTGAAACACCCCACTTCCCCATTTCTCGGCAAGAAGATCAGGTTCAAGCACAAATCGGCCTTCGAATCGGCCTACTGTTGGAGGGTATCGATTAAGAATCCGAGAAGGGTTTTGGTTTCGGCTCTGGGCACCGAGCTCATCGATGTGGTTCATAATCTGTTTGTGGGTGTGGGAGTGGGGCTTCCTTGTACGGTGATGGAGTGCGGTGATATCATTTACAGAAGCACTTTGCCGAAGCCTAATGGATTAACTCTCACAATTCCTGGTGCGATTCTGGCTTTGGGTACTCTTTCTTATCTCTGGGCCACTCCTGGAGTGGCTCCTGGCTTCTTTGATATGTTTATTCTTGCATTCGTCGAGAGGATTTTCAGACCCACTTTCAGAAAGGATGATTTTGTTTTGGGAAAGAAGTTGGGAGAAGGAGCGTTTGGTGTGGTCTATAGAGTGGCACTGGCTAAAAATCCTTCAGAGAAGAAGGAAGGCGACCTTGTCTTGAAAAAGGCTACAGAGTATGGTGCAGTTGAAATTTGGATGAACGAACGAGTGCGACGAGCTTGTGCTAATAGCTGTGCAGACTTCGTGTATGGTTTCCTTGAGAATTCTTCAAAGAAAGGAGGTGGTGAATATTGGCTCATATGGAAGTTTGAAGGGGAAGCTACATTGGCAGATTTAATGCAATCCAAAGATTTTCCCTATAATGTAGAGAGGATGATTCTCGGGGAGGGCCAGCAGCTGCCAAAAGGGTTGGAAAGGGAGAATAGAATCATTCAGACCATAATGCGACAGCTCTTATTTGCATTGGATAGTCTTCACTCCACAGGAATTGTGCATAGGGATATCAAGCCACAGAATATCATTTTCTCTGAAGGATCTCGCACTTTCAAAATCATTGATCTTGGAGCTGCAGCTGATCTTCGAGTTGGCATTAACTATATTCCAAAGGAGTTTCTACTGGACCCTAGATATGCTGCCCCAGAGCAATATATCATGAGCACTCAAACTCCATCCGCTCCCTCGGCTCCAGTGGCAACCGCACTTTCTCCAGTACTATGGCAGATGAACCTTCCTGATAGATTTGATATCTACAGCACCGGTCTCATCTTCCTCCAGATGGCATTTCCAGCAATGCGGACAGATAGCGGCCTCATACAGTTTAACCGTCAATTGAAGAGGTGTGACTATGACTTAGTCGCGTGGAGGAAAAGCGTGGAGCCTCGTGCCAGTGCGGACCTAAGAAAGGGCTTTGAATTGTTGGGTTTAGATGAAGGAATAGGATGGGAACTGTTGACGTCAATGGTTCGATACAAAGCACGACAAAGAACGAGCGCTAAGGCAGCTTTAGCTCACCCATACTTCGACAGGGAAGGTTTATTGGCTCTGTCCTTGGTGCAGAAACTGAGGCTGCAATTCTTTAGAGCTACACAGCAAGACTACACTGAAGCTGCTAATTGGATCATTCAGCTAATGGCAAAATCAGGAACTGAGCAGGATGGCGGCTTCACTGAAGCTCAGCTTCTGGAGCTCAAAGAAATCGTGCCGAAGAAGAAAGCGAGTCCTGAAAGAAACGCTCTGGCTTCGATTCTGAAGGTGCAACGGAAGATCCTAAAAACGTTAAACGAAAGCATGGACGAGTTCAGCCGACGAAGCAAGAGCCTGTGGTGGAGTAGGTGGATTCCCAGAGAGGAATGA 1755 47.35 MAAAVAAAGGVSIGVSKLQPRHLKHPTSPFLGKKIRFKHKSAFESAYCWRVSIKNPRRVLVSALGTELIDVVHNLFVGVGVGLPCTVMECGDIIYRSTLPKPNGLTLTIPGAILALGTLSYLWATPGVAPGFFDMFILAFVERIFRPTFRKDDFVLGKKLGEGAFGVVYRVALAKNPSEKKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLENSSKKGGGEYWLIWKFEGEATLADLMQSKDFPYNVERMILGEGQQLPKGLERENRIIQTIMRQLLFALDSLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQMNLPDRFDIYSTGLIFLQMAFPAMRTDSGLIQFNRQLKRCDYDLVAWRKSVEPRASADLRKGFELLGLDEGIGWELLTSMVRYKARQRTSAKAALAHPYFDREGLLALSLVQKLRLQFFRATQQDYTEAANWIIQLMAKSGTEQDGGFTEAQLLELKEIVPKKKASPERNALASILKVQRKILKTLNESMDEFSRRSKSLWWSRWIPREE 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12511061 12514956 - CmaCh04G020070.1 Cma04g02007 293088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02007 584 Gene3D Transferase(Phosphotransferase) domain 1 263 478 - -
Cma04g02007 584 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 1 584 - -
Cma04g02007 584 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 584 IPR044803 GO:0004674|GO:0009579
Cma04g02007 584 SUPERFAMILY Protein kinase-like (PK-like) 138 476 IPR011009 -
Cma04g02007 584 ProSiteProfiles Protein kinase domain profile. 154 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02007 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Cma04g02007 584 ProSitePatterns Protein kinases ATP-binding region signature. 160 188 IPR017441 GO:0005524
Cma04g02007 584 Pfam Protein kinase domain 156 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02007 584 Gene3D Phosphorylase Kinase; domain 1 141 236 - -
Cma04g02007 584 SMART serkin_6 154 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02007 584 CDD STKc_SNT7_plant 158 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02007 - - - csv:101207504 1046.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00290 Cma-Chr3:3811600 Cma04g02007 Cma-Chr4:12511061 5.61E-94 dispersed
Cma04g02007 Cma-Chr4:12511061 Cma07g01185 Cma-Chr7:6510948 3.27E-14 dispersed
Cma04g02007 Cma-Chr4:12511061 Cma01g02040 Cma-Chr1:12990690 3.11E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g261 Blo01g00485 Blo16g01053 Bda01g02095 . . . . . . . . . . . . . Cpe01g01762 . . . . . . . . . . . . . . Cone13ag0856 Cone19ag0856 . . . . . . . . . . . Bpe02g02285 Bma01g00154 . . . . Cma04g02007 . . . . . Bhi12g01376 . . . . . . . . . . . . . . Csa05g01509 . Cme09g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010559 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68522 PF00069 Pkinase 1.10E-21 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02007 Cma_Chr04 FPKM 6.492879 9.533206 20.495243 20.22998 24.848759 24.351891 25.233395 13.490771 13.380851 13.04476