Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02008 ATGGCTGGAAAAGCTCAAATCCCCACCAAAAATTCAGCGCTTATTTCTATGATTGCTGATGAGGATACGGTGGTTGGATTTCTTCTTGCTGGAGTTGGTAATGTTGACCTGCGAAGAAAAACTAATTACCTTATAGTGGACTCTAAGACAACTGTGAAACAAATTGAAGATGCTTTCAAAGAGTTTACAACAAGGGAGGATATTGCAATAGTGATGATTAGTCAATATGTTGCAAACATGATCAGGTTTCTGGTAGATAGCTATAACAAGCCAATTCCTGCAATATTGGAGATTCCTTCCAAGGATCACCCATATGACCCGGCACACGATTCAATTCTTTCCCGAGTAAAGAATCTGTTTTCTACTGAATCGGTGGCATCTGGGAGGCGTTAA 393 40.2 MAGKAQIPTKNSALISMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVMISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSILSRVKNLFSTESVASGRR 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12516510 12520759 - CmaCh04G020080.1 Cma04g02008 293089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02008 130 PANTHER V-TYPE PROTON ATPASE SUBUNIT F 1 130 - -
Cma04g02008 130 Gene3D ATPase, V1 complex, subunit F 9 122 IPR036906 GO:0034220
Cma04g02008 130 TIGRFAM V_ATP_synt_F: V-type ATPase, F subunit 11 124 IPR005772 GO:0033180|GO:0046961|GO:1902600
Cma04g02008 130 SUPERFAMILY AtpF-like 15 118 IPR036906 GO:0034220
Cma04g02008 130 Pfam ATP synthase (F/14-kDa) subunit 15 116 IPR008218 GO:0034220|GO:0046961
Cma04g02008 130 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 130 - -
Cma04g02008 130 PIRSF V-ATP_synth_F 3 123 IPR005772 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02008 Cma-Chr4:12516510 Cma10g01123 Cma-Chr10:7718173 9.62E-94 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02008 K02151 - csv:101215239 251.521