Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02011 ATGTCTGAATTCTCTCAACCTCCCAACCTCCCACCGCTCAACATGCCTTCCTTTGTCCTCTTTCTCTTCTTCTTCTTCTTCTTCTTCCCTTCTTCCATGGCTGCTCCTTATCCCTTCAGCATTTCTTACCATATTGACTGCGGTGGTCTAATCAACTCCACCGACCCATTTGGCACTACTTGGCTCTCCGACCGATTCTACACCGGCGGCACCACCGGAATAGTCTCTGAGCCCCTCATTTTCCATCACCCACAAGAGAAGAATCTCAGATTCTTCCCTCTTTCCTCCGGCAAGAAGAATTGCTACATTATACCCAATTTGCCCTCTGGCCGATACTACTTCCGCACATTCACCGTCTATGACAATTACGATGGAAGGTCTCACCCTCCTTCCTTTGATGCCTCCATTGAAGGCACTCTCGTCTTCAGTTGGCGTTCTCCTTGGAACGAGAACCTCGCCCGCCATGGCGCCTACTCCGATCTCTTCGCCTTCATTACCGATGGTGAGGCTGATTTTTGCTTCTACAGCCTTTCTACCGATTCGCCGGTGATTGGGTCTTTTCAGCTCGTTCAGGTCGATCCCTTGTCATATAACTCAACAACCATTGGAGAGAATTTCATTCTTGTTAACTACGGAAGGATTACTTGCGGTTCTGAGCAATGGGGCCCTGGGTTTAGCAATGATACCGACGTTTTCGGTCGCTCCTGGCAGTCTGATTCGGACTTCATAATCCCCACTCTGAAACAATCGGTTAAAGTTTTGTCGACTACAAATTCCGTAAGTGGGACCGATCAGCAGCCCAATTATTTTCCGATGAAATTGTATCAGAAGGCGGTCACTGGGGGAAGAGGGGTTCTTGAGTATGAATTGGGGGTGGACGCCAAATTGGACTACTTGATTTGGTTGCATTTTGCAGAGATTGATTCGAGTGTGAAGAAGGCCGGGCAGAGAGTGTTCGATGTGTTTATAAATGGCAATAATGCGACGAGGATCGATATCTTTGCAAAAGTGGGAAGTTTTGGAGCTTATTCATGGTCTTATACTGTGAAGAATTTGAGTAGCTTGACTTTGACTGTGAAGCTTGTGGGGGTGGTTGGCTCGCCGCTACTCAGTGGGCTTGAGAATTACGCTTTGGTTCCCAGAGATCTTTCCACCGCGGCGGAGCAAGTGTCTGCAATGAGAGCATTGAAAGAATCACTCCGTGTGCCCGGCAGAATGGGTTGGAATGGCGATCCTTGTGCTCCTACAAACTGGGATGCCTGGGAGGGAATAACATGTCGACCCAACAAGAACGCGACTGCCCTTGTTATATTTCAAATTGATCTTGGAAGTCAAGGTTTGAAAGGGTATATCAGTGACAAAATTATTCTTTTGACAAACTTAGTAAGCCTAAATCTTAGTTCTAACTCACTGGGGGGCACGATACCACCTGGGCTCGGTGAAAATTCTCTTACCCGACTGGATTTGTCAAATAATGAGTTAACAGGATCTATTCCAGATAGTTTAGCATCTCCAAATCTGCAGCTCGTGCTACTGAACGACAACTTACTGGATGGACGAGTTCCTGAAGAAATATATTCAATTGGTGTGCATGGTGGAGCCATCGATCTGTCTGGTAACAAGGGTTTATGCGGTGTGCCTTCCCTACCAACATGCCCTATATTCTGGGAAAATGGGCGGTTGTCTAAAAATGGTAAAATTGCAATAGGTGTATCATCCACCTTCCTTTTCTGTGCACTGCTGGCAGTGATCTACATATGCTGCATCAGAAGACGTCGAAATGATTATGATTTTGGGTTGCCTAGTGAATTAATTTCTCTTGCTGCCAAAAGGAACAGGTATCAGAGGCAGAAATCCTTAATGCTCCTGGAAATGGAGAGTCAACACGCCAAGGGATTATCACCTTTCAGTCCTCTCAACTGA 1923 46.54 MSEFSQPPNLPPLNMPSFVLFLFFFFFFFPSSMAAPYPFSISYHIDCGGLINSTDPFGTTWLSDRFYTGGTTGIVSEPLIFHHPQEKNLRFFPLSSGKKNCYIIPNLPSGRYYFRTFTVYDNYDGRSHPPSFDASIEGTLVFSWRSPWNENLARHGAYSDLFAFITDGEADFCFYSLSTDSPVIGSFQLVQVDPLSYNSTTIGENFILVNYGRITCGSEQWGPGFSNDTDVFGRSWQSDSDFIIPTLKQSVKVLSTTNSVSGTDQQPNYFPMKLYQKAVTGGRGVLEYELGVDAKLDYLIWLHFAEIDSSVKKAGQRVFDVFINGNNATRIDIFAKVGSFGAYSWSYTVKNLSSLTLTVKLVGVVGSPLLSGLENYALVPRDLSTAAEQVSAMRALKESLRVPGRMGWNGDPCAPTNWDAWEGITCRPNKNATALVIFQIDLGSQGLKGYISDKIILLTNLVSLNLSSNSLGGTIPPGLGENSLTRLDLSNNELTGSIPDSLASPNLQLVLLNDNLLDGRVPEEIYSIGVHGGAIDLSGNKGLCGVPSLPTCPIFWENGRLSKNGKIAIGVSSTFLFCALLAVIYICCIRRRRNDYDFGLPSELISLAAKRNRYQRQKSLMLLEMESQHAKGLSPFSPLN 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12566862 12580353 + CmaCh04G020110.1 Cma04g02011 293092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02011 640 ProSiteProfiles Leucine-rich repeat profile. 483 505 IPR001611 GO:0005515
Cma04g02011 640 Pfam Malectin-like domain 45 377 IPR024788 -
Cma04g02011 640 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 33 639 - -
Cma04g02011 640 Gene3D Ribonuclease Inhibitor 387 554 IPR032675 -
Cma04g02011 640 Gene3D - 212 376 - -
Cma04g02011 640 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 33 639 - -
Cma04g02011 640 SUPERFAMILY L domain-like 388 607 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02011 - - - bhj:120067195 1137.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02011 Cma-Chr4:12566862 Cma18g00384 Cma-Chr18:2104095 1.22E-96 dispersed
Cma04g02011 Cma-Chr4:12566862 Cma13g00630 Cma-Chr13:6031521 5.73E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g265 Blo01g00486 . Bda01g02093 . . . . . . . . . . . . . Cpe01g01765 . . . . . . . . . . . . . . Cone13ag0854 . Cone6ag0469 Cone9ag0482 . . . . . . . . . Bpe02g02283 Bma01g00156 . . . . Cma04g02011 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008532 1 1 2 1 1 1 2 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02011 Cma_Chr04 FPKM 15.479897 15.780823 14.788061 15.75292 16.478308 14.849513 16.98888 7.161048 8.273993 7.966144