Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02012 ATGGACACAACGAGCTCTTTAGACGACAGCACCGCCAGCGACTCCACCTCCGTTTCTCCCGTCACCCCATTACTCTTCCACTCCTCCTCCTCCTCCTCCCCCCCCGGAGTACCCTACGACGCCGAATCCCGGAAGCTTCCATCTTCCCGTTTCAAAGGAGTCGTCCCTCAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCACCAAAGGGTCTGGTTGGGCACATTCAACCAGGAACACCAGGCCGCCAAAGCCTACGACATCGCCGCCCTTCGCTACCGCGGCCGCGACGCCGTCACCAATTTCAAGCCCGGCGCCTTCTCTTCCGTCGACGCCGCCTTTGAGGCTGACTTTCTCAACTCCCACTCCAAGCTCGAGATCGTCGACATGCTCCGCAAACACACCTACAATGACGAGCTCCAGCAAAGCAAGCGATACGGTGGAGGAACGACGACGACGGCGACGGCGACGGCGGCGGCGCACTCTCTCCACAACGCGGCGTCGGAGTCGGACCGGGAGGTGCTGTTTGAGAAAACCGTGACGCCGAGCGACGTGGGGAAGTTGAACCGGCTGGTGATTCCGAAGCAGCACGCGGAGAAGAATTTTCCATTGGGGGAAGGGATGGGTTCGGCCAAAGGAGTACTCCTGAATTTCGAGGATATGGGAGGGAAGCTGTGGCGGTTCCGGTACTCGTATTGGAACAGCAGCCAGAGCTATGTGTTGACCAAGGGGTGGAGCCGGTTCGTAAAAGAGAAAACCCTCAGAGCCGGGGACGTGGTCCGTTTCCTACGCTCGACCGGCCCGGATAAGAAGCTTTACATCGATGGCAAAGCAGGCGGAGTGAAGCCGGTTCAAGTGGTAAGGCTATTTGGAGTGAATATTTTGGAAGTGCCGGTGGGGTGGTGTGGGAAGAGAGACAGAGAAGGCCTGTCGGAATTAGAAAGGACGAAGAAGCAAAGAATGATCAAAGCATTGTAA 984 57.83 MDTTSSLDDSTASDSTSVSPVTPLLFHSSSSSSPPGVPYDAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEHQAAKAYDIAALRYRGRDAVTNFKPGAFSSVDAAFEADFLNSHSKLEIVDMLRKHTYNDELQQSKRYGGGTTTTATATAAAHSLHNAASESDREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPLGEGMGSAKGVLLNFEDMGGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKTLRAGDVVRFLRSTGPDKKLYIDGKAGGVKPVQVVRLFGVNILEVPVGWCGKRDREGLSELERTKKQRMIKAL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12585554 12586537 + CmaCh04G020120.1 Cma04g02012 293093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02012 327 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 37 303 - -
Cma04g02012 327 CDD AP2 49 104 IPR001471 GO:0003700|GO:0006355
Cma04g02012 327 ProSiteProfiles B3 DNA-binding domain profile. 178 280 IPR003340 GO:0003677
Cma04g02012 327 Pfam B3 DNA binding domain 178 272 IPR003340 GO:0003677
Cma04g02012 327 SMART rav1_2 50 111 IPR001471 GO:0003700|GO:0006355
Cma04g02012 327 MobiDBLite consensus disorder prediction 1 37 - -
Cma04g02012 327 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 37 303 IPR044800 GO:0003700
Cma04g02012 327 Gene3D AP2/ERF domain 49 106 IPR036955 GO:0003700|GO:0006355
Cma04g02012 327 SUPERFAMILY DNA-binding domain 49 105 IPR016177 GO:0003677
Cma04g02012 327 CDD B3_DNA 177 264 IPR003340 GO:0003677
Cma04g02012 327 SUPERFAMILY DNA-binding pseudobarrel domain 174 270 IPR015300 -
Cma04g02012 327 Pfam AP2 domain 50 97 IPR001471 GO:0003700|GO:0006355
Cma04g02012 327 Gene3D - 166 283 IPR015300 -
Cma04g02012 327 MobiDBLite consensus disorder prediction 1 56 - -
Cma04g02012 327 SMART B3_2 178 280 IPR003340 GO:0003677
Cma04g02012 327 ProSiteProfiles AP2/ERF domain profile. 50 105 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02012 Cma18g01042 CCT
Cma04g02012 Cma18g01042 ECH
Cma04g02012 Cma15g00991 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02012 Cma-Chr4:12585554 Cma11g00470 Cma-Chr11:2279209 1.99E-56 dispersed
Cma15g00991 Cma-Chr15:5901090 Cma04g02012 Cma-Chr4:12585554 2.54E-161 transposed
Cma18g01042 Cma-Chr18:8666735 Cma04g02012 Cma-Chr4:12585554 8.67E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34915 PF02362 B3 1.20E-26 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02012 K09287 - csv:101206328 441.81