Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02013 ATGCGGAGTGGGAACTTGACTTGCATATCGTCGAGTGAGAGCGCGTGTTTGGAGGGTGATGAAGAAGGAGGAGGAGGAGGAGAAGACTCCATTTTCCTATCCCTTTGTCCGCCAGGCCAACGCCACACAGTTTCTTCCAAACACCGACAACTCCAAAACAAACAAATTCCTATTAGTCCAAATTCTTCTCTCCAAAACCCTAATATTCTTCATCATCAACATGCTGCTGTCACCGTCGCTATGCATATTGGTCCCCCTGCCACCGCCGCCGCCACCGAATCCAACGATGTCTCCGCTGCCCGCCCGGTTGATGGCCAGTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAGTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAATACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTACGACTTCCATGCTATTGCTGTGCAGAAGGGTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAGACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTCCGTGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCATAAAAGATCCCTTAAAGACCATGTTCGAGCCTTTGGAGATGGGCATGCACCTCACACGGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATGATCATGAACATGCTTCTTAA 852 48.12 MRSGNLTCISSSESACLEGDEEGGGGGEDSIFLSLCPPGQRHTVSSKHRQLQNKQIPISPNSSLQNPNILHHQHAAVTVAMHIGPPATAAATESNDVSAARPVDGQYWIPTPAQILVGPTQFSCSVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHAS 283
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 12697785 12699404 + CmaCh04G020130.1 Cma04g02013 293094
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02013 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Cma04g02013 283 Pfam Zinc finger, C2H2 type 122 141 IPR013087 -
Cma04g02013 283 SMART c2h2final6 207 227 IPR013087 -
Cma04g02013 283 SMART c2h2final6 170 202 IPR013087 -
Cma04g02013 283 SMART c2h2final6 122 144 IPR013087 -
Cma04g02013 283 SUPERFAMILY beta-beta-alpha zinc fingers 190 227 IPR036236 -
Cma04g02013 283 Gene3D Classic Zinc Finger 121 144 - -
Cma04g02013 283 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Cma04g02013 283 Gene3D Classic Zinc Finger 166 254 - -
Cma04g02013 283 SUPERFAMILY beta-beta-alpha zinc fingers 118 144 IPR036236 -
Cma04g02013 283 PANTHER ZINC FINGER PROTEIN WIP2 10 280 IPR043584 GO:0003700|GO:0010468
Cma04g02013 283 PANTHER ZINC FINGER PROTEIN WIP6 10 280 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02013 Cma-Chr4:12697785 Cma06g00080 Cma-Chr6:448777 9.16E-104 dispersed
Cma13g00258 Cma-Chr13:2152325 Cma04g02013 Cma-Chr4:12697785 4.85E-26 dispersed
Cma15g00992 Cma-Chr15:5931166 Cma04g02013 Cma-Chr4:12697785 5.57E-40 dispersed
Cma04g02013 Cma-Chr4:12697785 Cma07g01295 Cma-Chr7:7333650 3.01E-107 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34916 PF00096 zf-C2H2 0.011 CL0361 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02013 - - mcha:111022346 451.44