Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g02013 | ATGCGGAGTGGGAACTTGACTTGCATATCGTCGAGTGAGAGCGCGTGTTTGGAGGGTGATGAAGAAGGAGGAGGAGGAGGAGAAGACTCCATTTTCCTATCCCTTTGTCCGCCAGGCCAACGCCACACAGTTTCTTCCAAACACCGACAACTCCAAAACAAACAAATTCCTATTAGTCCAAATTCTTCTCTCCAAAACCCTAATATTCTTCATCATCAACATGCTGCTGTCACCGTCGCTATGCATATTGGTCCCCCTGCCACCGCCGCCGCCACCGAATCCAACGATGTCTCCGCTGCCCGCCCGGTTGATGGCCAGTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAGTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAATACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTACGACTTCCATGCTATTGCTGTGCAGAAGGGTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAGACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTCCGTGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCATAAAAGATCCCTTAAAGACCATGTTCGAGCCTTTGGAGATGGGCATGCACCTCACACGGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATGATCATGAACATGCTTCTTAA | 852 | 48.12 | MRSGNLTCISSSESACLEGDEEGGGGGEDSIFLSLCPPGQRHTVSSKHRQLQNKQIPISPNSSLQNPNILHHQHAAVTVAMHIGPPATAAATESNDVSAARPVDGQYWIPTPAQILVGPTQFSCSVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHAS | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 12697785 | 12699404 | + | CmaCh04G020130.1 | Cma04g02013 | 293094 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g02013 | 283 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 122 | 149 | IPR013087 | - | |
| Cma04g02013 | 283 | Pfam | Zinc finger, C2H2 type | 122 | 141 | IPR013087 | - | |
| Cma04g02013 | 283 | SMART | c2h2final6 | 207 | 227 | IPR013087 | - | |
| Cma04g02013 | 283 | SMART | c2h2final6 | 170 | 202 | IPR013087 | - | |
| Cma04g02013 | 283 | SMART | c2h2final6 | 122 | 144 | IPR013087 | - | |
| Cma04g02013 | 283 | SUPERFAMILY | beta-beta-alpha zinc fingers | 190 | 227 | IPR036236 | - | |
| Cma04g02013 | 283 | Gene3D | Classic Zinc Finger | 121 | 144 | - | - | |
| Cma04g02013 | 283 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 124 | 144 | IPR013087 | - | |
| Cma04g02013 | 283 | Gene3D | Classic Zinc Finger | 166 | 254 | - | - | |
| Cma04g02013 | 283 | SUPERFAMILY | beta-beta-alpha zinc fingers | 118 | 144 | IPR036236 | - | |
| Cma04g02013 | 283 | PANTHER | ZINC FINGER PROTEIN WIP2 | 10 | 280 | IPR043584 | GO:0003700|GO:0010468 | |
| Cma04g02013 | 283 | PANTHER | ZINC FINGER PROTEIN WIP6 | 10 | 280 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g02013 | Cma-Chr4:12697785 | Cma06g00080 | Cma-Chr6:448777 | 9.16E-104 | dispersed | |
| Cma13g00258 | Cma-Chr13:2152325 | Cma04g02013 | Cma-Chr4:12697785 | 4.85E-26 | dispersed | |
| Cma15g00992 | Cma-Chr15:5931166 | Cma04g02013 | Cma-Chr4:12697785 | 5.57E-40 | dispersed | |
| Cma04g02013 | Cma-Chr4:12697785 | Cma07g01295 | Cma-Chr7:7333650 | 3.01E-107 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34916 | PF00096 | zf-C2H2 | 0.011 | CL0361 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g02013 | - | - | mcha:111022346 | 451.44 |