Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02037 ATGTCACTCCTCAATCAACTCTTCAACAGAGGCGTCTTTGCGGGCAAATGCAAAACTTGCTTGAGCTTGGCAATCTCGCGGATCAAGCTGCTGCAGAATAAGAGGGATCTACAGCTGAAGAATATGCGCAAGGAGATCGCACAATTCTTGCAGACGGGACAGGAACCAATAGCTCGGATTCGGGTGGAGCATGTAATACGGGAACAAAACATATGGGCAGCATATGAAATTCTAGAGTTGTTTTGTGAATTTGTTCTTGCTCGTGTCCCCATCATCGAAAGCCAGAAAGAATGTCCAGTCGAACTGCGGGAGGCTATTGCGAGCATAATATTTGCTGCTCCTAGATGTTCTGACCTTCCAGATCTACTGCAGTTGAAGAATTTGTTTGCTGTCAAATATGGGAAAGAATTTGTCTCTGCTATTTCTGAGCTTCGTCCTGACTCCGGTGTTAATCGATCAATTATTGAAAAGCTTGCAGTGAGTGCGCCTCCTGGAGAACTAAAGCTCAAGGTCATGAAGGAGATTGCAAAAGAACATGGACTCGACTGGGATTCTTCCTCCACTGCTTCTGAATTTAGTAAAACCCACGAAGATCTGCTGGGTGGACCAAAGGTAGTACATGGAGCGGCAGCGTCTCAAGCTCCCTCTCAATATAGCTCGTCCAATCCTTCCACTCCTTATGGAGAATCGCCCGTTGTGTCTGTTGTAGAAAAGCAAGAACCTGAATGCCACCATACATTCACTCGAACCAGCAATAGCGCAAGTGATATCAAACCGGGACCTAAGAATTTTGATGTCAAACCAGAAGTCGCTTCTAAATTAGATATAAGACCACCTCCATCTGATGTATTAGAGAAAGCCAGAGCTGCCATTGCTTCAGCCGAACGTGCCACTGCAGCAGCCCGAGTTGCTGCCGAGCTAGCCAATGTCAACCTTGGAGCAATGAAGCTTGAAGGAGGAGGACAAGCTTCTGAGTGCTGA 981 46.59 MSLLNQLFNRGVFAGKCKTCLSLAISRIKLLQNKRDLQLKNMRKEIAQFLQTGQEPIARIRVEHVIREQNIWAAYEILELFCEFVLARVPIIESQKECPVELREAIASIIFAAPRCSDLPDLLQLKNLFAVKYGKEFVSAISELRPDSGVNRSIIEKLAVSAPPGELKLKVMKEIAKEHGLDWDSSSTASEFSKTHEDLLGGPKVVHGAAASQAPSQYSSSNPSTPYGESPVVSVVEKQEPECHHTFTRTSNSASDIKPGPKNFDVKPEVASKLDIRPPPSDVLEKARAAIASAERATAAARVAAELANVNLGAMKLEGGGQASEC 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13186393 13190921 + CmaCh04G020370.1 Cma04g02037 293118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02037 326 Gene3D - 5 192 IPR042277 -
Cma04g02037 326 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Cma04g02037 326 PANTHER IST1 FAMILY MEMBER 14 309 IPR005061 GO:0015031
Cma04g02037 326 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 14 309 - -
Cma04g02037 326 MobiDBLite consensus disorder prediction 210 230 - -
Cma04g02037 326 MobiDBLite consensus disorder prediction 212 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02037 - - - cmos:111429884 577.785
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02037 Cma18g01031 CCT
Cma04g02037 Cma18g01031 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00956 Cma-Chr1:6258370 Cma04g02037 Cma-Chr4:13186393 2.77E-88 dispersed
Cma04g02037 Cma-Chr4:13186393 Cma09g01192 Cma-Chr9:7658310 1.06E-85 dispersed
Cma18g01031 Cma-Chr18:8587517 Cma04g02037 Cma-Chr4:13186393 4.06E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g289 . . . . . Bpe10g00940 . Bma15g00084 . Cmo18g01044 . Cma18g01031 . Car18g00954 Sed06g1874 Cpe09g00289 Cpe01g01779 Bhi07g01341 Tan04g0880 Cmetu10g0761 Lac13g0479 Hepe01g1205 . . Cla05g02312 . Cec05g2507 Cco05g2549 Clacu05g2480 Cmu05g2341 Cre05g2458 Cone13ag0839 . . Cone9ag0468 Lsi04g00267 Csa05g02599 Chy10g01134 Cme10g00273 Blo06g00966 . . . Bpe11g01695 Bpe02g02080 . . . Cmo04g02140 . Cma04g02037 . Car04g01983 . . . . . . . . . . . . . . . . . . . Chy09g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011875 1 1 0 1 1 1 1 1 2 1 2 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02037 Cma_Chr04 FPKM 23.922703 26.432297 17.226057 16.153564 16.601727 14.423278 16.324171 23.995625 23.985506 21.898556