Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02057 ATGGGAAGAACACTCGACGCTCTTCTCGGAAGGAATTTCAGAGCCTCCAAATTCCGCCCTCTTCTCAACCTCGCCGTCTCTCGTCTTGCCATTCTCACCAACCAACGCCGACTGAGGCGCACTCAAGCTCAATCCGATGTTCTCCAGCTCCTCCAACTCCACCACCAACAGCGCGCCCTTCTTCGAGTGGAGCAAGTGATCAAGGACCAGAATGCCTTGGATGCGTATGTTTTGATGGAAGGGTACCTCAATCTCTTGATTGAAAGGACCTCCCTCCTCGAACAAGAAAGAGAATGCCCTGAGGAATTGAAAGAGGCGATTGCAGGGTTGCTATTTGCTGCTTCCAGATGTGGGGATTTCCCTGAACTTCATGAGATAAAATCAGTTTTGACAACTCATTTCGGAAAGGAATTTACTGCTCGTGCAGTTGAATTACGCAACAACTGTGGAGTCAATCATTTGTTAATGCAAAAACTTTCGACAAGGCAGCCCAATTTGGAGAGTAGAATGGATTTGCTCAAAACCATTGCTTCCGAGAATGGAATTACTTTGCAACTCGACGAAACTCCTCTTTCCAATGAGGCCAGAAACTCGAGACAAAACCAATCGGAGCCACATGGCGGAGTGGGAGAGAATCTGAAATTGTCCACTGAAGTCCCATCTGGATCGAAACAAAAGTACAAAGATGTGGCGGATGCAGCACAGGCCGCTTTCGAATCGGCAGCTCAAGCAGCAGCTGCGGCCAGAGCTGCCATGGAGCTCTCCCGCTCTGAATCACAAGACCCTGATGGTCCAAGCAGCCCGGGCCCTGGGTCTGCAACTAGTTCATACGACAAACAAGAGCAAAAGAAATCCAATGTCGAAGCCAAACCCAAATTGGAAATTGAATATGAATATGGGAGAGAAGAAGAAGGCAGCAAAATCAGACCAAAACCAGAAGTAAAGAATTCAATGTGTGGTTGTTCTTCGAACAGAGAGTTGTTTGTTAAAGAAAACAGAGAGATGGATGAACAGAGAGCTTCAAATATTGAAATTGGGGAGGAGATGGAAGCCAATTTAGAGAAGACAGCGATAACTGAGAAACCAAGCTTTCGTTTAAATCTGGAGAAGAAGCCAATTTCAGTGAGAACAAGAAGAGTGCGTGGGTACTGA 1152 46.7 MGRTLDALLGRNFRASKFRPLLNLAVSRLAILTNQRRLRRTQAQSDVLQLLQLHHQQRALLRVEQVIKDQNALDAYVLMEGYLNLLIERTSLLEQERECPEELKEAIAGLLFAASRCGDFPELHEIKSVLTTHFGKEFTARAVELRNNCGVNHLLMQKLSTRQPNLESRMDLLKTIASENGITLQLDETPLSNEARNSRQNQSEPHGGVGENLKLSTEVPSGSKQKYKDVADAAQAAFESAAQAAAAARAAMELSRSESQDPDGPSSPGPGSATSSYDKQEQKKSNVEAKPKLEIEYEYGREEEGSKIRPKPEVKNSMCGCSSNRELFVKENREMDEQRASNIEIGEEMEANLEKTAITEKPSFRLNLEKKPISVRTRRVRGY 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13701556 13703251 + CmaCh04G020570.1 Cma04g02057 293138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02057 383 MobiDBLite consensus disorder prediction 184 207 - -
Cma04g02057 383 PANTHER IST1 FAMILY MEMBER 8 380 IPR005061 GO:0015031
Cma04g02057 383 MobiDBLite consensus disorder prediction 259 280 - -
Cma04g02057 383 MobiDBLite consensus disorder prediction 249 291 - -
Cma04g02057 383 MobiDBLite consensus disorder prediction 184 221 - -
Cma04g02057 383 Pfam Regulator of Vps4 activity in the MVB pathway 21 182 IPR005061 GO:0015031
Cma04g02057 383 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 8 380 - -
Cma04g02057 383 Gene3D - 6 194 IPR042277 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02057 - - - mcha:111010325 462.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01532 Cma-Chr4:7758275 Cma04g02057 Cma-Chr4:13701556 5.48E-86 dispersed
Cma04g02057 Cma-Chr4:13701556 Cma14g00807 Cma-Chr14:4087372 2.30E-80 dispersed
Cma04g02057 Cma-Chr4:13701556 Cma04g02058 Cma-Chr4:13709589 1.74E-54 tandem
Cma18g01031 Cma-Chr18:8587517 Cma04g02057 Cma-Chr4:13701556 1.05E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g316 . . . . . . . . . . . . . . . . Cpe01g01794 . . . . . . . . . . . . . . . . . . . . . Cme10g01545 . . . . . Bpe02g02263 Bma01g00173 . . Cmo04g02154 . Cma04g02057 . Car04g01997 . . . . . . . . . . . . . . . . . . Csa05g01489 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002973 0 3 1 1 1 2 3 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 5 0 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02057 Cma_Chr04 FPKM 5.461933 6.848493 15.675164 15.394549 0.702118 0.655788 0.950004 91.213913 103.235405 92.120941