Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02060 | ATGCAGAGCTTTCATAACCCAGATCACCTCTATCCCCATTCTTCTTCTTCTTCTTCCATCCTTCTCCGGGGAGGAGACGACAGTGGCCACCATACGCGGTTTCTTCCGGATATTGAGGAACTTCAACAATCCGCTGATTTTCGTCACCATAATTCTGTTGATTTAAGCCCAAGTTCAGTTTTCAGTTTAAAATTGATCCACGACGCAGCTTTTCCAATCCACCACCTACCCTACGCGAACACGGATGTGGGTTCATTAGAAACAGGGTATTTAGACACAGGACAGCAATTGATGCGGTTGAAGAGGCTAGCTCCGCCGCAGACGGTGGCGGCTGCGGCATCGTTGGGAAACGGAAGCTTTGAGAACTGGGGTGAGTCAGCTATGGCTGATAATAGCCAGCAGACTGACACTTCTACAGACATCGACACTGATGAAAGAAACCAGTTTCCGGGAGCTGCTCATGGAGTTCTTGTGGCCGTGGATTCCATGGATCAATCTAAACCGAAATCTGCTGACCAGAAGACTCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCGAAGAAGAGTCGGCTGAGGAAGAAGGCATATGTCCAGCAGCTGGAAAACAGTCGACAGAGGCTTTCACAGCTAGAACAGGACCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCTGGGACAGCAAACCATTGTTTATCAATGCCAGGAAATGGTGCCTTGGCGTTTGATCTCGATTATGCACGGTGGCTCGACGAGCATCAACGTCTGATCAATGATTTGAGAGCATCGGCGAATTCTCAGTTGAGCGACGATGAATTGCGATTTCTTGTCGATGGGGTGATGGCACATTATGATGAACTCTTCAGGCTGAAAAGTGTTGGCGCCAAGGCCGACGTATTTCACATTCTTTCGGGCATGTGGAAGACTCCGGCCGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCGTCCGAACTTCTGAAGATAGTTGGGAACCATTTGGAGCCTTTAACGGATCAGCAGTTGATGGGCATATGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGAATTGAAGCTTTGCAACAATCTCTCGTAGAAACTCTTTCCTCTGCCTCTTTAGGTCCTGCCTGTTCCGGTAATGTTGCCGATTACATGGGCCAAATGGCTATTGCAATGAGCAAACTAACAACGCTAGAGAACTTTCTCCATCAGGCGGATCTTCTAAGACAACAAACGCTACAACAAATGCATCGAATATTAACTACTCGTCAAGCTGCACGAGCACTTCTCGTCATCAGTGATTACATTTCACGTCTTCGAGCTCTGAGTTCTCTGTGGTTAGCACGACCAAGAGACTGA | 1380 | 48.12 | MQSFHNPDHLYPHSSSSSSILLRGGDDSGHHTRFLPDIEELQQSADFRHHNSVDLSPSSVFSLKLIHDAAFPIHHLPYANTDVGSLETGYLDTGQQLMRLKRLAPPQTVAAAASLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFPGAAHGVLVAVDSMDQSKPKSADQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRQRLSQLEQDLHRARQQGIFVASGTANHCLSMPGNGALAFDLDYARWLDEHQRLINDLRASANSQLSDDELRFLVDGVMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSSASLGPACSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD | 459 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13726057 | 13729084 | - | CmaCh04G020600.1 | Cma04g02060 | 293141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02060 | 459 | Gene3D | - | 174 | 220 | - | - | |
Cma04g02060 | 459 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 98 | 459 | - | - | |
Cma04g02060 | 459 | Coils | Coil | 193 | 220 | - | - | |
Cma04g02060 | 459 | SUPERFAMILY | Leucine zipper domain | 174 | 217 | IPR046347 | GO:0003700|GO:0006355 | |
Cma04g02060 | 459 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 172 | 216 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g02060 | 459 | Pfam | bZIP transcription factor | 173 | 215 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g02060 | 459 | ProSiteProfiles | DOG1 domain profile. | 240 | 456 | IPR025422 | GO:0006351|GO:0043565 | |
Cma04g02060 | 459 | Pfam | Seed dormancy control | 258 | 331 | IPR025422 | GO:0006351|GO:0043565 | |
Cma04g02060 | 459 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 177 | 192 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g02060 | 459 | SMART | brlzneu | 170 | 238 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g02060 | 459 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cma04g02060 | 459 | PANTHER | TRANSCRIPTION FACTOR PERIANTHIA | 98 | 459 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02060 | Cma-Chr4:13726057 | Cma06g00025 | Cma-Chr6:157073 | 4.78E-163 | dispersed | |
Cma15g00908 | Cma-Chr15:4699844 | Cma04g02060 | Cma-Chr4:13726057 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34919 | PF14144 | DOG1 | 3.20E-30 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02060 | K14431 | - | csv:101210308 | 755.362 |