Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02060 ATGCAGAGCTTTCATAACCCAGATCACCTCTATCCCCATTCTTCTTCTTCTTCTTCCATCCTTCTCCGGGGAGGAGACGACAGTGGCCACCATACGCGGTTTCTTCCGGATATTGAGGAACTTCAACAATCCGCTGATTTTCGTCACCATAATTCTGTTGATTTAAGCCCAAGTTCAGTTTTCAGTTTAAAATTGATCCACGACGCAGCTTTTCCAATCCACCACCTACCCTACGCGAACACGGATGTGGGTTCATTAGAAACAGGGTATTTAGACACAGGACAGCAATTGATGCGGTTGAAGAGGCTAGCTCCGCCGCAGACGGTGGCGGCTGCGGCATCGTTGGGAAACGGAAGCTTTGAGAACTGGGGTGAGTCAGCTATGGCTGATAATAGCCAGCAGACTGACACTTCTACAGACATCGACACTGATGAAAGAAACCAGTTTCCGGGAGCTGCTCATGGAGTTCTTGTGGCCGTGGATTCCATGGATCAATCTAAACCGAAATCTGCTGACCAGAAGACTCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCGAAGAAGAGTCGGCTGAGGAAGAAGGCATATGTCCAGCAGCTGGAAAACAGTCGACAGAGGCTTTCACAGCTAGAACAGGACCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCTGGGACAGCAAACCATTGTTTATCAATGCCAGGAAATGGTGCCTTGGCGTTTGATCTCGATTATGCACGGTGGCTCGACGAGCATCAACGTCTGATCAATGATTTGAGAGCATCGGCGAATTCTCAGTTGAGCGACGATGAATTGCGATTTCTTGTCGATGGGGTGATGGCACATTATGATGAACTCTTCAGGCTGAAAAGTGTTGGCGCCAAGGCCGACGTATTTCACATTCTTTCGGGCATGTGGAAGACTCCGGCCGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCGTCCGAACTTCTGAAGATAGTTGGGAACCATTTGGAGCCTTTAACGGATCAGCAGTTGATGGGCATATGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGAATTGAAGCTTTGCAACAATCTCTCGTAGAAACTCTTTCCTCTGCCTCTTTAGGTCCTGCCTGTTCCGGTAATGTTGCCGATTACATGGGCCAAATGGCTATTGCAATGAGCAAACTAACAACGCTAGAGAACTTTCTCCATCAGGCGGATCTTCTAAGACAACAAACGCTACAACAAATGCATCGAATATTAACTACTCGTCAAGCTGCACGAGCACTTCTCGTCATCAGTGATTACATTTCACGTCTTCGAGCTCTGAGTTCTCTGTGGTTAGCACGACCAAGAGACTGA 1380 48.12 MQSFHNPDHLYPHSSSSSSILLRGGDDSGHHTRFLPDIEELQQSADFRHHNSVDLSPSSVFSLKLIHDAAFPIHHLPYANTDVGSLETGYLDTGQQLMRLKRLAPPQTVAAAASLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFPGAAHGVLVAVDSMDQSKPKSADQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRQRLSQLEQDLHRARQQGIFVASGTANHCLSMPGNGALAFDLDYARWLDEHQRLINDLRASANSQLSDDELRFLVDGVMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSSASLGPACSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13726057 13729084 - CmaCh04G020600.1 Cma04g02060 293141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02060 459 Gene3D - 174 220 - -
Cma04g02060 459 PANTHER TRANSCRIPTION FACTOR TGA9 98 459 - -
Cma04g02060 459 Coils Coil 193 220 - -
Cma04g02060 459 SUPERFAMILY Leucine zipper domain 174 217 IPR046347 GO:0003700|GO:0006355
Cma04g02060 459 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 216 IPR004827 GO:0003700|GO:0006355
Cma04g02060 459 Pfam bZIP transcription factor 173 215 IPR004827 GO:0003700|GO:0006355
Cma04g02060 459 ProSiteProfiles DOG1 domain profile. 240 456 IPR025422 GO:0006351|GO:0043565
Cma04g02060 459 Pfam Seed dormancy control 258 331 IPR025422 GO:0006351|GO:0043565
Cma04g02060 459 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 177 192 IPR004827 GO:0003700|GO:0006355
Cma04g02060 459 SMART brlzneu 170 238 IPR004827 GO:0003700|GO:0006355
Cma04g02060 459 MobiDBLite consensus disorder prediction 1 23 - -
Cma04g02060 459 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 98 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02060 Cma-Chr4:13726057 Cma06g00025 Cma-Chr6:157073 4.78E-163 dispersed
Cma15g00908 Cma-Chr15:4699844 Cma04g02060 Cma-Chr4:13726057 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34919 PF14144 DOG1 3.20E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02060 K14431 - csv:101210308 755.362