Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02062 ATGGTTTTCTCCCACAAAATGCAACAAATTGCATTCAAAATGGGTTTCACTCTCTCCGATTTCGCCCACACTTTGGAACAAGAGCGCCGTAAAGTCCTCATGTTCCAGCGCGAGCTCCCTCTCTGTTTGGAGCTCGTTACTCGCGCGATTGATTGTTGCAGGCATCACGTGTCCGAGTCCACGACGGAGAATCGTCTATCGGAGTGTTCGGAGCAGACTTCCAGTGACGTGGGTCCGGTTCTTGAGGAGTTTATTCCGATTAATAGATATGGGGTTTCTGATTCTGAACAACAACGACAACGACAACAACAACTGCCCTGTGAAACTCGAACGGAGAACACTGACGACTCTGATCGAAATAATTTGAATTTGTGTCCTTCGGATTGGCTCAGATCTGCCCAGCTTTGGAAGGATCCTTCTGCCTTGAATCAGGACCTGCCGGAGAAGACGGCTGTTGTTGAGGTCAAGAGTAATGGCGGAGCTTTCCGGCCATTTCAGAAGGAGAAAACCGGTGGTGGAGGAACGTCATCGACTTCGGCTCCGGCTGCGACGAGCTCCACTGCGGAAATGGGGTCCGGTGAAAGTAATCGACAGGAAGAAAAAGAAGCGCAGAATCAGAGGAAACAAAGACGGTGCTGGTCACCGGAGCTACACCGGCGATTCCTTCATGCTCTTCAACAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATCAGAGAGTTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAATATCGTCTACACACGAGACGCCCAAGTACAACAATGCACCACCACGATACAGCCCAGACGCCGCAGTTCCTGGTTGTGGGCGGCATATGGGTACCGGCTGCGGAGTACGCCACCACATCCACCGGAGAAGCAGTGAGAGCAGCCACCACGAACGGAATTTATGCACCGGTGGTTAGGACGACGACGGCGGGGGCACAGGCATTAGCGAGTACAGTTCAGAAGGCGAAGGTTAGATTATCTGGGGGTGCGGCGGAGTGTAATTCTGCTACTACATCTTCCTCCACACATACGTCATCAGTTTCACCTGCTTGTTGA 1092 51.83 MVFSHKMQQIAFKMGFTLSDFAHTLEQERRKVLMFQRELPLCLELVTRAIDCCRHHVSESTTENRLSECSEQTSSDVGPVLEEFIPINRYGVSDSEQQRQRQQQLPCETRTENTDDSDRNNLNLCPSDWLRSAQLWKDPSALNQDLPEKTAVVEVKSNGGAFRPFQKEKTGGGGTSSTSAPAATSSTAEMGSGESNRQEEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSTTMHHHDTAQTPQFLVVGGIWVPAAEYATTSTGEAVRAATTNGIYAPVVRTTTAGAQALASTVQKAKVRLSGGAAECNSATTSSSTHTSSVSPAC 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13755560 13757668 - CmaCh04G020620.1 Cma04g02062 293143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02062 363 MobiDBLite consensus disorder prediction 91 121 - -
Cma04g02062 363 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cma04g02062 363 Gene3D - 207 265 - -
Cma04g02062 363 PANTHER TRANSCRIPTION FACTOR HHO2 18 358 - -
Cma04g02062 363 MobiDBLite consensus disorder prediction 170 193 - -
Cma04g02062 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cma04g02062 363 MobiDBLite consensus disorder prediction 91 110 - -
Cma04g02062 363 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cma04g02062 363 MobiDBLite consensus disorder prediction 194 212 - -
Cma04g02062 363 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Cma04g02062 363 MobiDBLite consensus disorder prediction 157 212 - -
Cma04g02062 363 MobiDBLite consensus disorder prediction 343 363 - -
Cma04g02062 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 358 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02062 Cma-Chr4:13755560 Cma05g01320 Cma-Chr5:9980785 2.31E-51 dispersed
Cma15g00910 Cma-Chr15:4714619 Cma04g02062 Cma-Chr4:13755560 1.64E-165 wgd
Cma18g01041 Cma-Chr18:8663506 Cma04g02062 Cma-Chr4:13755560 3.66E-83 wgd
Cma04g01522 Cma-Chr4:7701261 Cma04g02062 Cma-Chr4:13755560 8.60E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34920 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02062 - - cpep:111786881 478.789