Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02062 ATGGTTTTCTCCCACAAAATGCAACAAATTGCATTCAAAATGGGTTTCACTCTCTCCGATTTCGCCCACACTTTGGAACAAGAGCGCCGTAAAGTCCTCATGTTCCAGCGCGAGCTCCCTCTCTGTTTGGAGCTCGTTACTCGCGCGATTGATTGTTGCAGGCATCACGTGTCCGAGTCCACGACGGAGAATCGTCTATCGGAGTGTTCGGAGCAGACTTCCAGTGACGTGGGTCCGGTTCTTGAGGAGTTTATTCCGATTAATAGATATGGGGTTTCTGATTCTGAACAACAACGACAACGACAACAACAACTGCCCTGTGAAACTCGAACGGAGAACACTGACGACTCTGATCGAAATAATTTGAATTTGTGTCCTTCGGATTGGCTCAGATCTGCCCAGCTTTGGAAGGATCCTTCTGCCTTGAATCAGGACCTGCCGGAGAAGACGGCTGTTGTTGAGGTCAAGAGTAATGGCGGAGCTTTCCGGCCATTTCAGAAGGAGAAAACCGGTGGTGGAGGAACGTCATCGACTTCGGCTCCGGCTGCGACGAGCTCCACTGCGGAAATGGGGTCCGGTGAAAGTAATCGACAGGAAGAAAAAGAAGCGCAGAATCAGAGGAAACAAAGACGGTGCTGGTCACCGGAGCTACACCGGCGATTCCTTCATGCTCTTCAACAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATCAGAGAGTTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAATATCGTCTACACACGAGACGCCCAAGTACAACAATGCACCACCACGATACAGCCCAGACGCCGCAGTTCCTGGTTGTGGGCGGCATATGGGTACCGGCTGCGGAGTACGCCACCACATCCACCGGAGAAGCAGTGAGAGCAGCCACCACGAACGGAATTTATGCACCGGTGGTTAGGACGACGACGGCGGGGGCACAGGCATTAGCGAGTACAGTTCAGAAGGCGAAGGTTAGATTATCTGGGGGTGCGGCGGAGTGTAATTCTGCTACTACATCTTCCTCCACACATACGTCATCAGTTTCACCTGCTTGTTGA 1092 51.83 MVFSHKMQQIAFKMGFTLSDFAHTLEQERRKVLMFQRELPLCLELVTRAIDCCRHHVSESTTENRLSECSEQTSSDVGPVLEEFIPINRYGVSDSEQQRQRQQQLPCETRTENTDDSDRNNLNLCPSDWLRSAQLWKDPSALNQDLPEKTAVVEVKSNGGAFRPFQKEKTGGGGTSSTSAPAATSSTAEMGSGESNRQEEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSTTMHHHDTAQTPQFLVVGGIWVPAAEYATTSTGEAVRAATTNGIYAPVVRTTTAGAQALASTVQKAKVRLSGGAAECNSATTSSSTHTSSVSPAC 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13755560 13757668 - CmaCh04G020620.1 Cma04g02062 293143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02062 363 MobiDBLite consensus disorder prediction 91 121 - -
Cma04g02062 363 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cma04g02062 363 Gene3D - 207 265 - -
Cma04g02062 363 PANTHER TRANSCRIPTION FACTOR HHO2 18 358 - -
Cma04g02062 363 MobiDBLite consensus disorder prediction 170 193 - -
Cma04g02062 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cma04g02062 363 MobiDBLite consensus disorder prediction 91 110 - -
Cma04g02062 363 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cma04g02062 363 MobiDBLite consensus disorder prediction 194 212 - -
Cma04g02062 363 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Cma04g02062 363 MobiDBLite consensus disorder prediction 157 212 - -
Cma04g02062 363 MobiDBLite consensus disorder prediction 343 363 - -
Cma04g02062 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 358 IPR044787 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02062 - - - cpep:111786881 478.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02062 Cma-Chr4:13755560 Cma05g01320 Cma-Chr5:9980785 2.31E-51 dispersed
Cma15g00910 Cma-Chr15:4714619 Cma04g02062 Cma-Chr4:13755560 1.64E-165 wgd
Cma18g01041 Cma-Chr18:8663506 Cma04g02062 Cma-Chr4:13755560 3.66E-83 wgd
Cma04g01522 Cma-Chr4:7701261 Cma04g02062 Cma-Chr4:13755560 8.60E-96 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma19g00216 . 150 347 G2-like Transcription Factor Family AT5G16560 51.5 1.2e-40 164.9
Cma09g00194 CCT 1 164 G2-like Transcription Factor Family AT5G42630 56.8 1.4e-38 157.1
Cma12g00506 CCT,CST 13 151 G2-like Transcription Factor Family AT5G42630 58.6 7.9e-37 151.4
Cma04g02062 . 20 258 G2-like Transcription Factor Family AT1G25550 51.6 2.6e-50 196.4
Cma15g00910 . 20 257 G2-like Transcription Factor Family AT1G25550 53.4 1.0e-49 194.5
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT5G05090 54.6 1.5e-74 276.9
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 5.3e-72 268.5
Cma14g00494 . 1 253 G2-like Transcription Factor Family AT5G05090 60.1 3.3e-66 249.2
Cma06g00034 . 1 274 G2-like Transcription Factor Family AT5G05090 51.7 1.3e-65 247.3
Cma06g01228 . 12 316 G2-like Transcription Factor Family AT4G13640 56.3 1.2e-61 234.2
Cma14g01894 . 44 336 G2-like Transcription Factor Family AT4G13640 50.3 2.1e-53 206.8
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma06g01737 . 38 269 G2-like Transcription Factor Family AT1G69580 50.4 2.3e-40 163.7
Cma05g00862 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 9.1e-37 151.8
Cma19g01121 . 1 379 G2-like Transcription Factor Family AT1G79430 53.8 7.8e-87 318.2
Cma10g01192 . 1 340 G2-like Transcription Factor Family AT1G79430 54.6 4.4e-82 302.4
Cma20g00290 . 1 365 G2-like Transcription Factor Family AT1G79430 52.7 2.5e-77 286.6
Cma02g00669 . 1 359 G2-like Transcription Factor Family AT1G79430 52.4 3.3e-77 286.2
Cma14g01894 . 52 225 G2-like Transcription Factor Family AT1G79430 59.8 9.3e-40 161.8
Cma06g01228 . 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cma06g01737 . 77 285 G2-like Transcription Factor Family AT3G04030 59.4 3.1e-47 186.4
Cma06g01737 . 77 269 G2-like Transcription Factor Family AT5G18240 50.5 1.6e-38 157.5
Cma07g00373 . 76 319 G2-like Transcription Factor Family AT2G01060 60.7 2.8e-56 216.1
Cma03g00611 . 84 327 G2-like Transcription Factor Family AT2G01060 59.3 1.9e-52 203.4
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 1.3e-88 323.9
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT3G10760 60.8 3.0e-88 322.8
Cma06g00034 . 1 277 G2-like Transcription Factor Family AT3G10760 58.8 8.6e-80 294.7
Cma14g00494 . 1 258 G2-like Transcription Factor Family AT3G10760 56.6 2.3e-72 270.0
Cma06g00034 . 1 205 G2-like Transcription Factor Family AT2G40970 62.5 1.5e-60 230.3
Cma07g01099 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.4e-60 228.0
Cma03g00158 . 64 266 G2-like Transcription Factor Family AT2G40970 58.8 1.4e-58 223.8
Cma14g00494 . 1 192 G2-like Transcription Factor Family AT2G40970 59.0 3.1e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34920 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02062 Cma_Chr04 FPKM 47.166332 52.730911 7.584239 6.106259 6.450238 7.057085 6.442295 33.840191 36.533779 35.780819