Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02063 ATGACACTTTCCCTCCCCTTCTCTCACTCCTCTCTCCATTACCACCACCACCACCATCCTTTCCCTCTTTTCCTCTCTCCCTCCCGCCGCTTTCAATGGCCTCGAATGCTTTCCTCTCTCCCTTCCGATAACCTTCTCCTCCTCCTCGGCGCCACTGGCTCTGGTAAATCCTCCCTCTCCATTGACATCGCTGCCCGCTTCCCCTCCGAGATCATCAATTCCGACAAAATGCAACTCTACAGAGGCCTTGATGTAACCACCAACAAGCTCCCCTTCTCCGACCGTCGCGGCGTTCCCCACCACCTCCTTGGCGATTTCGACCCTCTCGCAGGTGAGGTCTCCGCTGCCGCTTTTCGCTCTCAGGCCTCTGCGGTCATCTCCGGCGTCGTCTCTCGTGGGAACCTTCCCGTTGTCGTTGGCGGGTCTAACTCGTACATTCACGCGTTGGTGACGGCGGGTCTCGATCAGGACTATGACGTTTTCGACGGTCCTCTTAATCGGGTGTCGGCGGAGTTTCGGTATCGGTGCTGCTTTCTGTGGGTCGACGTGTCGTTTCCAGTTCTGAAGCAGTATTTGTCGAAGCGGGTGGACGATATGTTGGAGGCTGGGATGGTGGGTGAGTTGGCAGAGTTTTACGACCCGGAAATGGCTGAGACGGAGCCCCGAGTCGGGCTAAGGAAGGCCATCGGAGTTCCAGAGTTCGAGGAGTTTTTCCGGCGATATCATCCGAAAGGGAGGGAATACAGAGAGGGGGATCCGCTGCGGTCAGGCGCATACGAAGAAGCGGTGAGGAAAATAAAGGAGAACACGTGGCAGCTGACGAAAAGACAGTTAGGGAAGATCGGACGGCTGAGAATGGCGGGGTGGGACCTTAAGAGAGTGGACGCCACGGCGGCGGTTGTGGCTGTACTGGCGTCGGAAGCGGCGGAAAAACGGTCAGAAATATGGGAAGCACAGGTGGTGGAACCAAGCGTAAAGATTGTGAAGAGGTTCATTGAGGAGTAG 1005 56.52 MTLSLPFSHSSLHYHHHHHPFPLFLSPSRRFQWPRMLSSLPSDNLLLLLGATGSGKSSLSIDIAARFPSEIINSDKMQLYRGLDVTTNKLPFSDRRGVPHHLLGDFDPLAGEVSAAAFRSQASAVISGVVSRGNLPVVVGGSNSYIHALVTAGLDQDYDVFDGPLNRVSAEFRYRCCFLWVDVSFPVLKQYLSKRVDDMLEAGMVGELAEFYDPEMAETEPRVGLRKAIGVPEFEEFFRRYHPKGREYREGDPLRSGAYEEAVRKIKENTWQLTKRQLGKIGRLRMAGWDLKRVDATAAVVAVLASEAAEKRSEIWEAQVVEPSVKIVKRFIEE 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13809064 13810068 + CmaCh04G020630.1 Cma04g02063 293144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02063 334 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 185 291 - -
Cma04g02063 334 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 38 333 IPR039657 -
Cma04g02063 334 Pfam IPP transferase 78 152 - -
Cma04g02063 334 Pfam IPP transferase 173 278 - -
Cma04g02063 334 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 4-RELATED 38 333 - -
Cma04g02063 334 Hamap tRNA dimethylallyltransferase [miaA]. 45 305 IPR018022 GO:0008033
Cma04g02063 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 218 IPR027417 -
Cma04g02063 334 Gene3D - 44 332 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02063 K10760 IPT; adenylate dimethylallyltransferase (cytokinin synthase) [EC:2.5.1.27 2.5.1.112] - csv:101209073 498.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02063 Cma18g01014 CCT
Cma04g02063 Cma15g00912 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02063 Cma-Chr4:13809064 Cma08g00358 Cma-Chr8:2053360 2.40E-78 dispersed
Cma19g00648 Cma-Chr19:6860331 Cma04g02063 Cma-Chr4:13809064 6.68E-67 dispersed
Cma15g00912 Cma-Chr15:4721847 Cma04g02063 Cma-Chr4:13809064 2.87E-162 wgd
Cma18g01014 Cma-Chr18:8489329 Cma04g02063 Cma-Chr4:13809064 8.06E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g319 Blo01g00500 Blo16g01068 . Bda11g01156 Bpe13g01354 . . . . Cmo18g01024 . Cma18g01014 . Car18g00937 Sed06g1896 Cpe09g00308 . Bhi07g01317 Tan04g0843 Cmetu10g1173 Lac13g0505 . . . Cla05g02292 Cam05g2465 Cec05g2486 Cco05g2529 Clacu05g2460 Cmu05g2321 Cre05g2439 . . . . Lsi04g00246 Csa05g02620 Chy10g01155 Cme10g00251 . . . Bda11g01156 . . . . . Cmo04g02160 Cmo15g00950 Cma04g02063 Cma15g00912 Car04g02003 Car15g00856 Cpe13g00407 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002431 1 2 2 0 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 3 2 2 4 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02063 Cma_Chr04 FPKM 0.340299 1.007074 0.0 0.0 0.088188 0.417534 0.173647 6.866524 8.460963 7.585715