Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02066 ATGGCCGAAGAAGATGATAAGAGATTGAAGAAAAGGAAGAAGAAGAGGTTGATAGGCGCCGACAGGAGGAGGCGTCTCCTTCGTCTCAAATGCTGTGTGCAGAACTACGATTGGGGGGTTCTAGGGTGTAATTCACAAGTTGCGAGGATGTTTTTGCTCAATTCGGGCTCCTACAGTGCCGATCCGGATGAATGTTACGCGGAGTTCTGGATTGGAACGCATAAATCGGGTCCGTCTTTCGTTTTTTTTGGACGGGACTATAATGCCGCTGCAATTGGATCTAAACCCTTGAGTCTCAAGGACTGGATCACGGTCGATCCGGGCGCTGTGCTTGGTGATAAGGTTGCGCGGAAATGGGGAGGCGATCTCCCCTTCCTCTTCAAGGTGCTGTCGGTAGAGAAGGCTTTATCTATTCAGGCTCATCCGGATAAAGAGTTAGCGAGGGCTTTGCACGAAGCTCAACCGAGCATCTATAAAGATGACAATCACAAGCCAGAAATGGCTTTAGCATTGACTGGGTTTGAGGCTCTTTGTGGGTTCATCAGTTCTAAGGAGCTCAAGGGGGTGCTTAGTAGCGTTCCTGAGATAGTAGAATTAGTCCAAGGTGCAGATGCAGAGAAGTTCTCACACGATAGTGAGCAAAATGGGAAGGAGAAAGTGAAATCACTTTTTGAGTCCATATTTGGTCAGATCATGTCATCTAACAAGGCCATGGTTCGTGAGGCTATATGTAAACTAAAAAGGCGACTTAGTTTGGAGAAAAAGAAGAGGCAACTGTCTACCAAAGAACAATTGGTTCTCAGACTAGAAGCTCAATATCCTGCTGATGTCGGTATACTAGCAGCATTTTTTCTAAACTATGTGAAGTTAAAACCAGGCGAAGCGTTATATCTTGGTCCGAATGAACCCCATGCATATATATCTGGGGAATGCATCGAGTGTATGGCAACCTCTGACAATGTTGTTCGTGCCGGCCTTACCTCTAAAAAAAGAGACGTTCAAGCACTTCTTTCAATGCTCAACTACAAACAGGGGTTTCCCGAAATCTTGCAAGGAGTTTCGTTGAATGAATACACACGAAAGTACGCCCCTCCTTTTGATGAATTTGAAGTTGATCGCTGTATTCTTCCAGTAGCTGCATCTGTGTCCTTCCCCTCTGTCCCAGGACCATCTCTGTTTCTGTTAATGTCTGGAAAAGGGACAATTGTGACAGGCTATTCTGAAGAAAGTACTTTTCAAGAGGGTGAGGTTCTGTTTGTTCCAGCATATATGGAGGTCAGTGTAACAGCTGCAGCTACAGAATTACATATGTACAGGGCTGGGGTCAACAACAGATTCTTTAGAGACTTGTGA 1353 45.38 MAEEDDKRLKKRKKKRLIGADRRRRLLRLKCCVQNYDWGVLGCNSQVARMFLLNSGSYSADPDECYAEFWIGTHKSGPSFVFFGRDYNAAAIGSKPLSLKDWITVDPGAVLGDKVARKWGGDLPFLFKVLSVEKALSIQAHPDKELARALHEAQPSIYKDDNHKPEMALALTGFEALCGFISSKELKGVLSSVPEIVELVQGADAEKFSHDSEQNGKEKVKSLFESIFGQIMSSNKAMVREAICKLKRRLSLEKKKRQLSTKEQLVLRLEAQYPADVGILAAFFLNYVKLKPGEALYLGPNEPHAYISGECIECMATSDNVVRAGLTSKKRDVQALLSMLNYKQGFPEILQGVSLNEYTRKYAPPFDEFEVDRCILPVAASVSFPSVPGPSLFLLMSGKGTIVTGYSEESTFQEGEVLFVPAYMEVSVTAAATELHMYRAGVNNRFFRDL 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13864585 13868434 - CmaCh04G020660.1 Cma04g02066 293147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02066 450 ProSitePatterns Phosphomannose isomerase type I signature 1. 158 166 IPR018050 GO:0004476
Cma04g02066 450 Coils Coil 252 272 - -
Cma04g02066 450 Gene3D Phosphomannose Isomerase, domain 2 182 348 - -
Cma04g02066 450 Pfam Phosphomannose isomerase type I, helical insertion domain 208 285 IPR046458 -
Cma04g02066 450 Gene3D Jelly Rolls 26 440 IPR014710 -
Cma04g02066 450 CDD cupin_PMI_type_I_N 30 342 - -
Cma04g02066 450 PANTHER MANNOSE-6-PHOSPHATE ISOMERASE 17 448 IPR016305 GO:0004476|GO:0009298
Cma04g02066 450 PANTHER MANNOSE-6-PHOSPHATE ISOMERASE 17 448 - -
Cma04g02066 450 SUPERFAMILY RmlC-like cupins 25 443 IPR011051 -
Cma04g02066 450 Gene3D Jelly Rolls 30 324 IPR014710 -
Cma04g02066 450 PRINTS Phosphomannose isomerase type I signature 29 47 IPR016305 GO:0004476|GO:0009298
Cma04g02066 450 PRINTS Phosphomannose isomerase type I signature 65 80 IPR016305 GO:0004476|GO:0009298
Cma04g02066 450 PRINTS Phosphomannose isomerase type I signature 158 181 IPR016305 GO:0004476|GO:0009298
Cma04g02066 450 PRINTS Phosphomannose isomerase type I signature 269 284 IPR016305 GO:0004476|GO:0009298
Cma04g02066 450 PRINTS Phosphomannose isomerase type I signature 285 304 IPR016305 GO:0004476|GO:0009298
Cma04g02066 450 PRINTS Phosphomannose isomerase type I signature 304 323 IPR016305 GO:0004476|GO:0009298
Cma04g02066 450 PRINTS Phosphomannose isomerase type I signature 323 342 IPR016305 GO:0004476|GO:0009298
Cma04g02066 450 Pfam Phosphomannose isomerase type I, catalytic domain 26 180 IPR046457 -
Cma04g02066 450 TIGRFAM manA: mannose-6-phosphate isomerase, class I 26 433 IPR001250 GO:0004476|GO:0005975|GO:0008270
Cma04g02066 450 PIRSF PMI 23 448 IPR016305 GO:0004476|GO:0009298
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02066 K01809 manA, MPI; mannose-6-phosphate isomerase [EC:5.3.1.8] - csv:101220595 769.615
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02066 Cma15g00917 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00380 Cma-Chr1:1906231 Cma04g02066 Cma-Chr4:13864585 0 dispersed
Cma04g02066 Cma-Chr4:13864585 Cma14g00819 Cma-Chr14:4133975 0 dispersed
Cma15g00917 Cma-Chr15:4778408 Cma04g02066 Cma-Chr4:13864585 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g329 Blo01g00502 . Bda01g02070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02261 . . . Cmo04g02163 Cmo15g00956 Cma04g02066 Cma15g00917 Car04g02006 Car15g00860 Cpe13g00402 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005332 2 4 2 1 1 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 0 1 1 1 3 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02066 Cma_Chr04 FPKM 4.045113 4.523052 4.314037 3.857343 15.227394 13.323082 15.481814 1.842538 2.414381 2.694993