Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02078 ATGCTCTGTTTCTCGTTCCAAAATGTGGCTCTGTTTCTCCTTCTTCTATGCTCCTCCTCTCATTGTCTTCTTGTAAGTTCTTTGAATCATGAAGGGTTTATGCTTTTGTCATTTAAGCACTCCATTTTCGAAGACCCACATGGGGCTTTGACCGATTGGGATTCTTCTGATGAAACCCCTTGTTCTTGGAATGGCGTTGGCTGTATACACCAAATTGTTGTTTCTCTTACGTTTCCTAAGAACAATCTATATGGGTTTCTTCCTTCCTCTCTCGGTGCTCTTGCTGGCCTCCGCCATGTCAATTTCAGGAACAATAGGCTGTTTGGGAGCTTGCCTTCACCGCTCTTTTCCGCTCAACGCCTACAAAGCTTGGTTCTCTATGGGAATTCCTTTTCTGGGTCTGTTCCAAATGGGATTGGTAAGCTTAAATTCCTTCAAACTCTGGATTTATCTCAAAATTTCTTTAATGGCTCCTTACCCACTTCGATTCTTCAATGCAAGAGGCTTAAAACCCTTGATCTTAGTCAGAATAACTTCACTGGTTCACTGCCTCATGGGTTTGGAACTAGCTTGAGTTCTTTGGAGAAACTTGATCTTTCATTCAACAGCTTCGATGGTTCTGTTCCTAATGATTTGGGGAGTTTGGGTAGCTTACAAGGAACTCTTGACTTGTCTCATAATCATTTTTCTGGTTCAATCCCTTCTAGCCTTGGGAACTTACCAGAAAAGGTTTACATTGATCTCAGCCACAACAATTTGAATGGTCCAATACCCCAAAATGGTGCTCTTATGAACAGAGGACCCACTGCTTTTATTGAAAATCCTGGGCTCTGTGGTTCCCCATTGAAGAACACATGTTCTTCACCATCATTGCTGCCATTTCTCCCAAGGACTTATGGTGAAAACGCTAAGAAGGCTAGTGGATTAAGTAAGAGTGCTGTGATTGCTATAGTACTTGGTGATATGATTGGCATATGTTTAGTTGGGTTATTGATCTCATATTGTTATTCTAAACTGTTCAATCCAAGAAACAGCAGAGAATGTTTATGTTTCAGGAAGGATGAATCCGAGACGGTTTCACAGAACGTCGAGCAGCTCGATCTCGTGGCATTGGATGAACAAGTTGAGTTTGATCTTGATGAACTTCTCAAGGCATCTGCATTCATTCTTAGCAAAAGTGGGATTGGGATAATGTATAAAGTGGTGCTCGACAACGGCGTTACATTGGCCGTGCGTCGATTAGGTGAAGGCGGTTCTCAAAGGCTCAAAGAGTTTCAGACAGAAGTAGAAGCCATAGCAAAGCTAAGACATCCTAATCTTGTCACTCTTAGAGCCTATTACTGGTCTGTTGATGAGAAGCTGCTCATTTATGAGTTCATGCCAAATCAAAACCTGGCCACTGCCATTCATGGAAAGCGAGAAATGGAAGCTTTCACGCCGTTATCTTGGTCTGTAAGGCTAAAGATCATGAAAGGAATTGCTAAAGGAATGGTTTATCTCCATGAATTCAGCCCCAAGAAGTATGTTCATGGAGATTTGAAGCCCAACAACATACTTCTCAGTGAGAACATGGAAGCCAAAGTTTCGGACTTTGGCCTAGCTCGACTTGCCAACATAGCTGGAGTAACCCCGACCGTACAATCGAATCGAATGGCATCAAATAAACCGTTAGATCCAAAGCCATCGAAAACCGTAACGTCTGAGATCATTTGCAGTTCATCTTCCAACACTGGAACTTATTATCAAGCTCCTGAATCACTCAAAGTCTTGAAACCATCTCAAAAATGGGATGTTTACTCATATGGTGTGATCTTACTTGAAATGATCATTGGAAGATTCCCACTAATCCAAGTGAGTTCTTCCTCTGAAATGGATCTTGTTCATTGGATCCAACTCTGCATTGAAGAACAAAAACCAATTTCAGAAGTCATTGATCCATTTCTAGTTCGAGATGTAGATAACGAAGAAGAGATCGTCTCGGTACTAAAACTTGCAATGGCTTGTGTTCATGGAAGCCCTGAAAGGAGACCTTCCATGAGACACATCTCGGACGCGCTCGAAAGGGTATCGTTTGAACCGAGGAATTAA 2088 42.1 MLCFSFQNVALFLLLLCSSSHCLLVSSLNHEGFMLLSFKHSIFEDPHGALTDWDSSDETPCSWNGVGCIHQIVVSLTFPKNNLYGFLPSSLGALAGLRHVNFRNNRLFGSLPSPLFSAQRLQSLVLYGNSFSGSVPNGIGKLKFLQTLDLSQNFFNGSLPTSILQCKRLKTLDLSQNNFTGSLPHGFGTSLSSLEKLDLSFNSFDGSVPNDLGSLGSLQGTLDLSHNHFSGSIPSSLGNLPEKVYIDLSHNNLNGPIPQNGALMNRGPTAFIENPGLCGSPLKNTCSSPSLLPFLPRTYGENAKKASGLSKSAVIAIVLGDMIGICLVGLLISYCYSKLFNPRNSRECLCFRKDESETVSQNVEQLDLVALDEQVEFDLDELLKASAFILSKSGIGIMYKVVLDNGVTLAVRRLGEGGSQRLKEFQTEVEAIAKLRHPNLVTLRAYYWSVDEKLLIYEFMPNQNLATAIHGKREMEAFTPLSWSVRLKIMKGIAKGMVYLHEFSPKKYVHGDLKPNNILLSENMEAKVSDFGLARLANIAGVTPTVQSNRMASNKPLDPKPSKTVTSEIICSSSSNTGTYYQAPESLKVLKPSQKWDVYSYGVILLEMIIGRFPLIQVSSSSEMDLVHWIQLCIEEQKPISEVIDPFLVRDVDNEEEIVSVLKLAMACVHGSPERRPSMRHISDALERVSFEPRN 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14146147 14148841 + CmaCh04G020780.1 Cma04g02078 293159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02078 695 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cma04g02078 695 SMART serkin_6 388 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02078 695 Gene3D Phosphorylase Kinase; domain 1 351 459 - -
Cma04g02078 695 Pfam Protein kinase domain 396 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02078 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Cma04g02078 695 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 10 690 - -
Cma04g02078 695 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Cma04g02078 695 SUPERFAMILY Protein kinase-like (PK-like) 390 687 IPR011009 -
Cma04g02078 695 Gene3D Ribonuclease Inhibitor 190 284 IPR032675 -
Cma04g02078 695 SUPERFAMILY L domain-like 30 283 - -
Cma04g02078 695 Gene3D Transferase(Phosphotransferase) domain 1 460 692 - -
Cma04g02078 695 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 690 - -
Cma04g02078 695 ProSiteProfiles Protein kinase domain profile. 384 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02078 695 Pfam Leucine rich repeat 168 229 IPR001611 GO:0005515
Cma04g02078 695 CDD STKc_IRAK 390 688 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02078 Cma18g00997 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01825 Cma-Chr4:9208413 Cma04g02078 Cma-Chr4:14146147 0 dispersed
Cma04g02078 Cma-Chr4:14146147 Cma18g00707 Cma-Chr18:6442392 0 dispersed
Cma15g00060 Cma-Chr15:305392 Cma04g02078 Cma-Chr4:14146147 0 wgd
Cma18g00997 Cma-Chr18:8398722 Cma04g02078 Cma-Chr4:14146147 0 wgd
Cma04g01489 Cma-Chr4:7578697 Cma04g02078 Cma-Chr4:14146147 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68523 PF00069 Pkinase 9.30E-34 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02078 - - csv:101203259 1097.03