Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02079 ATGCCGACAGTGCAATCCGACATTCGCTGTGCTTATCACATCGCCTCCTCCACCTTCCGCTCCCTCTCCCCTAGTTTTAGGCCCCGCCGAACCGCTGCCTTTCCATGTAAACTGCTCTTCCCCTCCTTCAAATTGAGAGCCTTCTCCACATGTGCTGCCGTGAGAGTTCCCGAGAAGCCGTCGATTTGTACGGCCGACGAGCTTCATTATGCCTCTGTACCGAATTCTGACTGGAGGCTTGCTCTCTGGCGCTATCGTCCCTCCCCTCAGGCGCCTCCGAGGAATCATCCGCTTTTGCTATTATCCGGAGTCGGAACTAATGCTATTGGTTATGATCTTGCCCCTGGGTGTTCTTTTGCGCGGCATATGTCTGGTCAGGGGTATGATACATGGATTCTTGAAGTTCGAGGTGCAGGACTGAGCTTGCAGGAACCAAATGTGAAAGAAATTGAGCATTCAGCTAAAGTTAAATCAGAAAAAATGGAAGCAATCTCTGAGAGCAAAATTAATGGAACTGTACATGTGGAAGAAGAGTCAACAAAAATTCTTGAAGATCTCTCAAAATCAGATACTTGCATCAATGGGAAAGAATCTGACTTTTCTATGGTTGAGGAAGAAGACTTCATAGGAATAGCAACAATTTGGGATGAGTCAAGTGTAGTTTCGGAGTTAACAGAAACTTTTATGCGTTTGTCAGAACGGCTATCTGGCTTTTTAAGTGAAGGCCAATCAAGGATTATGTCCGCCAAACTATTTGATCAAATTTCAAAACTTTTAGTTGATTCCCAATTATCTGAACGTTTTAATGAGGTAAGGGAAAAGCTTTCATATTTGTTGGAAACAGGACAGACCTCAGTCATTGCTGGCCAGATTAGGGATTTGAGTCAAAGGCTTGTAGAAATTATTGAAGAAGGTCAACGATCTGTTTCACCTCCATTATTCAATTTGCAAGATCGATTTTCTTCAACGATTGACGATTTTCAGAAACAACTTGATTTAATAGTAAAATATGACTGGGACTTTGATCATTATCTGTTGGAGGACGTTCCTGCTGCGATGGATTATATCATGGCTATAAGCAAGCCAAAGGATGGCAAATTGCTTGCTATTGGGCACTCCATGGGTGGTATCTTGCTTTATGCAAGACTTTCTCGTTGTGGTTTTGAAGGAAGAGACCCCAGATTGGCTGCTATTGTTACATTGGCATCATCTCTTGACTATACTTCTTCAAAATCAGCCTTGAAAATGCTATTGCCCCTTGCAGATCCTGCACAGGCTCTTAATGTTCCAGTTGTTCCATTAGGAGCTTTATTATCAGCTTCATATCCTCTTTCATCTCGTTCTCCTTATGTCTTATCATGGCTAAATAGTCTTATTTCTGCAGAAGATATGATGGATCCTGAAATGTTAAAAAAGCTCGTCTTGAACAACTTCTGTACCATTCCTGCTAAACTTATCTTACAACTCACAACCGCTTTTCGAGAGGGTGGTTTGCGAGACAGAAGTAATACATTTTATTACAAGGACCATTTACATAAATGCCATGTCCCAATCTTAGCGCTTGCTGGAGACCAAGATCTAATCTGTCCACCTGTAGCTGTAGAAGAAACAGCAAAGCTTATTCCCGAGCACCTTGTTTCCTATAAATGTTTTGGAGAACCGGGAGGTCCACATTATGCACATTATGATTTAGTTGGAGGACGCCTGGCAGCGGAGCAGGTGTATCCATGTATTATCGATTTTATTAGCAAGCATGATGCAGTTTGA 1767 42.5 MPTVQSDIRCAYHIASSTFRSLSPSFRPRRTAAFPCKLLFPSFKLRAFSTCAAVRVPEKPSICTADELHYASVPNSDWRLALWRYRPSPQAPPRNHPLLLLSGVGTNAIGYDLAPGCSFARHMSGQGYDTWILEVRGAGLSLQEPNVKEIEHSAKVKSEKMEAISESKINGTVHVEEESTKILEDLSKSDTCINGKESDFSMVEEEDFIGIATIWDESSVVSELTETFMRLSERLSGFLSEGQSRIMSAKLFDQISKLLVDSQLSERFNEVREKLSYLLETGQTSVIAGQIRDLSQRLVEIIEEGQRSVSPPLFNLQDRFSSTIDDFQKQLDLIVKYDWDFDHYLLEDVPAAMDYIMAISKPKDGKLLAIGHSMGGILLYARLSRCGFEGRDPRLAAIVTLASSLDYTSSKSALKMLLPLADPAQALNVPVVPLGALLSASYPLSSRSPYVLSWLNSLISAEDMMDPEMLKKLVLNNFCTIPAKLILQLTTAFREGGLRDRSNTFYYKDHLHKCHVPILALAGDQDLICPPVAVEETAKLIPEHLVSYKCFGEPGGPHYAHYDLVGGRLAAEQVYPCIIDFISKHDAV 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14149911 14157370 - CmaCh04G020790.1 Cma04g02079 293160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02079 588 Pfam alpha/beta hydrolase fold 335 562 IPR000073 -
Cma04g02079 588 SUPERFAMILY alpha/beta-Hydrolases 71 585 IPR029058 -
Cma04g02079 588 PANTHER LYSOSOMAL ACID LIPASE-RELATED 44 584 - -
Cma04g02079 588 PIRSF UCP031088_abhydr 5 588 IPR016969 -
Cma04g02079 588 Gene3D alpha/beta hydrolase 328 584 IPR029058 -
Cma04g02079 588 Gene3D alpha/beta hydrolase 70 156 IPR029058 -
Cma04g02079 588 PANTHER BNAA08G31330D PROTEIN 44 584 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02079 - - - csv:101217845 1038.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02079 Cma15g00929 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00053 Cma-Chr18:220973 Cma04g02079 Cma-Chr4:14149911 3.41E-41 transposed
Cma15g00929 Cma-Chr15:4899027 Cma04g02079 Cma-Chr4:14149911 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g357 Blo01g00736 . Bda01g01845 . . . . . . . . . . . . . Cpe01g01801 . . . . . . . . . . . . . . . . Cone6ag0424 Cone9ag0446 . Csa05g02058 . . . . . . . Bpe02g02021 Bma01g00443 . . Cmo04g02174 Cmo15g00969 Cma04g02079 Cma15g00929 Car04g02016 Car15g00873 Cpe13g00390 . Bhi12g00846 . . . . . Lcy10g1467 Cla01g00578 Cam01g0605 Cec01g0595 Cco01g0619 Clacu01g0597 Cmu01g0570 Cre09g1937 Lsi09g00626 . Chy09g00886 Cme09g01419
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006608 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02079 Cma_Chr04 FPKM 3.050533 3.133868 6.359992 6.415323 7.514881 6.599473 8.366156 6.526254 6.460909 6.217024