Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02080 ATGCAGAAAATGGGTCATTGGGTCCCTGATTCTCTTCCTAGCTTTGCCAAAAATCTTCATATCTTGGTGGTGGATCATGAAACCTTATCTCTCAACCACTTGAGTTCCTTGCTTAGGGAGCAGTCTTACCATGTTACGACCACTGTATTGGGATCTATTGCTCTATCAATGATTCAAGAAAAAAGTGATGAGTTCGACCTTGTCATGGCTAACGTTAGCATGCCCGACATGGACAGTTTTTCATTCTTGCACGTGCTCCTTAAGATGAAAATTGTTGTCATTTTTATGTCATCAGTGATGAACTTGGACGTGGCTACGAAAGCATTGGCTGAAGGAGCGTGTTATTTTCTTCAGAAACCTATTTCCAAGGATGATCTCAAATATGTATGGCAACACGTGTATCGAAGGAACAGAAACATATCAAAGCTAAACCATGAAGCAAATTGCGTAGAAAAAGCCAAATATGGAAAAGAATCTGTCGGCATCCAAAACGACGACACTGTTGTTTTGTCTCAGCCCACCGATGAAGTTAGTATTAATAATAACGGTAGTATTAACTATCAACTTATGAGCTATAAAGAAGAAGGGCAGAATCAACCAACTAATTCCCATGATACCCTAGTTGCTTCATACTTCGAAGGAAAGAGATTAATGGATGACATAGAAGGAACAAGCAAGGAGAAGAGAGTTATATATTACTCAACGCCTACCAATTTTGGAGATACAAGAATTGATGAGGATAATAGAAGAATGAAGGAATATTATATTTCTAGTGATAACAGATCACGTGTCGTTTGGAATGTGGAACGACGTCGCAAATTCTCCGACGCTCTCAACAAGCTAGGAGATAAATGTCGTCCAAAACTTATACTGAAATTGATGAATGAACCATCCTTGACACTGCGCCAGGTAGCTAACCACCTGCAGAAATACAAAGCACAAGTAGAGTCCATGAAAAAGGGGAGAGAAAATAAATTAGCTCCAAGGAGGGAAGCTTCCAAATTCAATTTCTCAGTCAGGACTCAACTTCCTCTTCCGTTGGTACCAAAGCACCCTCACGATGAGGCAAACAGCTCTACAAAGGGAAGTTTAACCTCTTTTATAGGAGGGGAAAGATTCCGACTTATTGCTCCTAAACCTGTGCCTAGTCCTAAACTGCCTGTTAGCGCCAACTTTGCAAATCATGGTCTCATAATGCTTGGCCAAAATTTTCAACCTGTTGATTCAAACTACAATTCAGTTCCATATATCATCAATCAGACAACTCCAAAGGTAACTTCTTCTTGTGTATTTGATGAAACTCAGTTCTCAGATAATCATCTTGATGTAGTACAGCAAGATTTGACTACTTTCAAGATTGAAAACCAAGAAGCAATGGGATGTAATGGCACTTCAGAAGGGATTCAGTTGATGTCAAACAACATGGCTTTTCCTGATTCAACCAACTTGGACAATATTGCTGCAAATTTTGGAAATGAAGGAAGCCAACAACAATCAGCCGAATTTGATTATCTCTTAAATTTTTTAGAAGATGATCCACACGAGTTTGACAGTGACTTAAATCTGAGTGACGTAGATAAGTACAGCGAGTGGCTAAAGAACACTGTTCTTGAAAATAGAAGCGGTCCAGACAGCTTTCTTGGTGACAGTGCAGAAAACTTTTCAACTGAAAACACCCAATAA 1683 39.39 MQKMGHWVPDSLPSFAKNLHILVVDHETLSLNHLSSLLREQSYHVTTTVLGSIALSMIQEKSDEFDLVMANVSMPDMDSFSFLHVLLKMKIVVIFMSSVMNLDVATKALAEGACYFLQKPISKDDLKYVWQHVYRRNRNISKLNHEANCVEKAKYGKESVGIQNDDTVVLSQPTDEVSINNNGSINYQLMSYKEEGQNQPTNSHDTLVASYFEGKRLMDDIEGTSKEKRVIYYSTPTNFGDTRIDEDNRRMKEYYISSDNRSRVVWNVERRRKFSDALNKLGDKCRPKLILKLMNEPSLTLRQVANHLQKYKAQVESMKKGRENKLAPRREASKFNFSVRTQLPLPLVPKHPHDEANSSTKGSLTSFIGGERFRLIAPKPVPSPKLPVSANFANHGLIMLGQNFQPVDSNYNSVPYIINQTTPKVTSSCVFDETQFSDNHLDVVQQDLTTFKIENQEAMGCNGTSEGIQLMSNNMAFPDSTNLDNIAANFGNEGSQQQSAEFDYLLNFLEDDPHEFDSDLNLSDVDKYSEWLKNTVLENRSGPDSFLGDSAENFSTENTQ 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14160800 14163272 - CmaCh04G020800.1 Cma04g02080 293161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02080 560 Pfam Response regulator receiver domain 21 127 IPR001789 GO:0000160
Cma04g02080 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 546 IPR045279 GO:0009736
Cma04g02080 560 SUPERFAMILY Homeodomain-like 261 317 IPR009057 -
Cma04g02080 560 CDD REC_typeB_ARR-like 21 134 - -
Cma04g02080 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11-LIKE 15 546 - -
Cma04g02080 560 SMART REC_2 19 130 IPR001789 GO:0000160
Cma04g02080 560 Gene3D - 18 153 - -
Cma04g02080 560 SUPERFAMILY CheY-like 17 146 IPR011006 -
Cma04g02080 560 Gene3D - 258 318 - -
Cma04g02080 560 ProSiteProfiles Response regulatory domain profile. 20 134 IPR001789 GO:0000160
Cma04g02080 560 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 262 313 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02080 - - - cmax:111470486 983.786
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00061 Cma04g02080 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02080 Cma-Chr4:14160800 Cma12g00050 Cma-Chr12:187608 5.56E-35 dispersed
Cma04g02080 Cma-Chr4:14160800 Cma04g02081 Cma-Chr4:14373690 0 tandem
Cma04g01484 Cma-Chr4:7551459 Cma04g02080 Cma-Chr4:14160800 1.15E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g367 . . . . . . . . . . . Cma04g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g02080 . . . . . . . . . . . . Cla01g00580 Cam01g0607 Cec01g0597 Cco01g0621 Clacu01g0599 Cmu01g0572 Cre09g1935 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002835 0 8 0 0 0 1 3 1 1 1 1 1 2 1 1 5 1 0 0 1 1 7 3 1 1 1 2 8 2 0 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34923 PF00072 Response_reg 9.90E-15 CL0304 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02080 Cma_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0