Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02083 ATGTCACTGGAAGTTTCGCTTGAACGACGAAAGCAGTCCCAAACTCCTGTGACTGGCAATGGAAATGGCGTCGTCTCGTCCAGCGCACCTTCCTTCTCAACTCACAGGCTTCGTCTCCAGCCAAAGGAAGATCACAAGTCGGAGAGCTACGAGGACCTGCAATTGGAGTTTAGCCCCCTCCTCTTTAGTATGCTGGAAAGGCACTTGCCTCCGAGCATGCTAAATGTGGCACGCGACCTTAAGCTTCAGTACATGAGGGACATTCTACTCCGATATGCTCCAGAGGGTGAACGCAACCGAGTTCAGAGGCATAGAGAATACCGACAAAAGATTATATCAAATTATCAGCCATTACACAGGGAGCTTTACAGCTTGCATGCTGCAAACTTCTTTGTCCCTTCTTTTCTCAAAGCTATCAATGAGAATTCAGAGGAGAGCTTTAGACGCATTATGTCTGAACCCTCTCCAGGAATATATAAATTTGAAATGCTTCAGCCACAATTTTGTGAGAAGCTATTATCTGAGGTGGAAAGTTTTGAAAGATGGGTTCACGAGACAAAATTCAGAATTATGCGACCAAACACAATGAACAAATATGGTGCTGTTCTTGATGATTTTGGTTTGGAGACCATGCTTGATAAGTTGATGGATGATTTTATCCGTCCTATATCCAGAGTTTTCTTTTCAGAAGTTGGAGGAGGCACATTGGACTCTCATCACGGCTTTGTTGTAGAATATGGAATTGATAGAGACGTCGAACTTGGTTTTCATGTGGATGACTCAGAAGTCACGTTGAATGTTTGCTTGGGTAAACAATTTTCTGGTGGTGAACTATTCTTTCGTGGCATCCGATGTGACAAACATGTTAATACGGAGACTCAATCAGAGGAAATCTTTGACTATTTCCACGTTCCTGGGCATGCGGTTCTTCATTGTGGTCGTCATCGGCATGGTGCTAGAGCCACAACATCTGGGCGTCGGGTCAACTTACTTTTGTGGTGCAGAAGTTCTGTATTCAGAGAGTTGAAAAAATACCAGAAAGATTTCTCTAGCTGGTGTGGAGAGTGCCAACGTGAGAAGAGAGAAAGGCAGCTCATTTCAATTGATGCAACAAAGCAGGAGTTACTTAAAAGGGAAGTAAAATCTCCTCCTTGA 1155 43.81 MSLEVSLERRKQSQTPVTGNGNGVVSSSAPSFSTHRLRLQPKEDHKSESYEDLQLEFSPLLFSMLERHLPPSMLNVARDLKLQYMRDILLRYAPEGERNRVQRHREYRQKIISNYQPLHRELYSLHAANFFVPSFLKAINENSEESFRRIMSEPSPGIYKFEMLQPQFCEKLLSEVESFERWVHETKFRIMRPNTMNKYGAVLDDFGLETMLDKLMDDFIRPISRVFFSEVGGGTLDSHHGFVVEYGIDRDVELGFHVDDSEVTLNVCLGKQFSGGELFFRGIRCDKHVNTETQSEEIFDYFHVPGHAVLHCGRHRHGARATTSGRRVNLLLWCRSSVFRELKKYQKDFSSWCGECQREKRERQLISIDATKQELLKREVKSPP 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14416823 14428894 - CmaCh04G020830.1 Cma04g02083 293164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02083 384 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 237 336 IPR005123 -
Cma04g02083 384 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 18 381 - -
Cma04g02083 384 Gene3D q2cbj1_9rhob like domain 158 336 - -
Cma04g02083 384 SMART p4hc 156 335 IPR006620 GO:0005506|GO:0016705|GO:0031418
Cma04g02083 384 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 18 381 - -
Cma04g02083 384 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02083 - - - csv:101218320 746.888
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02083 Cma15g00933 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00933 Cma-Chr15:4933478 Cma04g02083 Cma-Chr4:14416823 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g377 . Blo16g00721 . Bda11g00153 Bpe13g01046 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0795 Cone19ag0800 . . . Csa05g02051 . . . . . Bda11g00153 . . . Bma06g01094 . Cmo04g02184 Cmo15g00973 Cma04g02083 Cma15g00933 Car04g02022 Car15g00877 . . Bhi12g00858 . . . Hepe02g2684 . Lcy10g1462 Cla01g00584 Cam01g0610 Cec01g0601 Cco01g0626 Clacu01g0602 Cmu01g0575 Cre09g1930 Lsi09g00633 . Chy09g00881 Cme09g01415
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006881 2 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02083 Cma_Chr04 FPKM 8.60141 6.895849 9.144204 9.816892 14.884225 15.519062 15.117043 9.592002 8.905138 9.653662