Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02086 ATGGCTTCTTTCTCTTGCCCTGTTTCTTATGTTGTGAGGTGCTCCACTGCCAAAGAAGCGAATGATTCTAACAAGCAGAGGTATGTTAACGTTAATGGCAATTTTATTGGGTCCATTTCAGAAGCTTCTTCGAGATCTTTGATTGCCTCTGTTGCGGAAAATGGGTGTGTTGTGAATGATGTTCGACAGAAGATTCCTTCGAAGAAGCAGCTGGTCGATACTCATCGGCAAGGGCTGATCATCGAAGGAGGTGTTGGGTATAGACAAACTGTTGTGATTCGATCGTATGAAGTTGGTCCTGATAAGACTGCAACTCTGGAGAGTGTAATGAATCTTCTGCAGGAAACAGCATTGAATCATGTTTGGATGTCTGGACTCCTCAGCAATGGCTTTGGGGCCACCCATGGCATGATGAAGAACAATCTCATCTGGGTTGTTTTGCGAATGCACGTCCAAGTCGACCACTATCCTATATGGGGGGAGATTGTTGATATCGATACCACATGGGTGATGATGAACCAGCAAACTAGACGCCTCTCGAAAATGCCAGATGAGGTAAGGGCAGAGATTTCACCATGGTTTATAGAAAAGCATGCTATCAAAGAAGATGCCCCTGAGAAAATTTCCAAGCTTGATGACAAAGCCAAGTACATGAACCCTGACTTGAAGCCAAAGAGAAGTGATCTGGACATGAACCACCATGTCAACAATGTCAAGTATCTAAGATGGATGCTAGAGACGACACCTGACCATGTTTTGGAGTCCCATCAACTGTCTAGTATCATATTAGAGTACAGAAGGGAATGCGCAAGCTCTGATATAGATATGGACATGATAGAAGATAATGAAATCAGTATCCTACATGGGTTTTCCTTGGCATCTGAGATTCTCAAATGTGGTGGGCTCTTGGGATCTTATAACCAAGGGACATTGAGGTATACACATCTACTACAAATTGAAGGGGAAGCTAAGAATGAAGAGATAATGAAGGGAAGAACCACATGGAAGAAGAAGCTTACCACTATACCATTTTCCACAGTAAATATCATGTCTAGCAGTCTCGTGCCTCTTTACGAAGAAGACAACACGCCAACAACGCAACATTCCTCCAAGCAAAACAGGATTATTCATAGTCTTTGTTGCTTTGCTTCACAAGGGAGTTCACCAGATGGAGCTGCTCCTGCAAATGTAATAGAAATGACAGAGAATCCCTTCAAAGAGGTCAAGAAACTGTGTAAACATAAGAGAAACAAT 1254 42.74 MASFSCPVSYVVRCSTAKEANDSNKQRYVNVNGNFIGSISEASSRSLIASVAENGCVVNDVRQKIPSKKQLVDTHRQGLIIEGGVGYRQTVVIRSYEVGPDKTATLESVMNLLQETALNHVWMSGLLSNGFGATHGMMKNNLIWVVLRMHVQVDHYPIWGEIVDIDTTWVMMNQQTRRLSKMPDEVRAEISPWFIEKHAIKEDAPEKISKLDDKAKYMNPDLKPKRSDLDMNHHVNNVKYLRWMLETTPDHVLESHQLSSIILEYRRECASSDIDMDMIEDNEISILHGFSLASEILKCGGLLGSYNQGTLRYTHLLQIEGEAKNEEIMKGRTTWKKKLTTIPFSTVNIMSSSLVPLYEEDNTPTTQHSSKQNRIIHSLCCFASQGSSPDGAAPANVIEMTENPFKEVKKLCKHKRNN 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14464396 14466676 - CmaCh04G020860.1 Cma04g02086 293167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02086 418 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 221 273 IPR029069 -
Cma04g02086 418 Pfam Acyl-ACP thioesterase 162 337 IPR002864 GO:0006633|GO:0016790
Cma04g02086 418 Gene3D Hotdog Thioesterase 80 165 - -
Cma04g02086 418 Gene3D Hotdog Thioesterase 166 342 - -
Cma04g02086 418 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 167 339 - -
Cma04g02086 418 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 167 339 IPR045023 GO:0006633|GO:0016297
Cma04g02086 418 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 1 167 - -
Cma04g02086 418 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 1 167 IPR045023 GO:0006633|GO:0016297
Cma04g02086 418 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 86 203 IPR029069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02086 - - - cmos:111460383 635.565
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02086 Cma15g00937 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02086 Cma-Chr4:14464396 Cma05g01324 Cma-Chr5:10023512 9.42E-75 dispersed
Cma15g00937 Cma-Chr15:4973771 Cma04g02086 Cma-Chr4:14464396 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008529 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02086 Cma_Chr04 FPKM 0.038139 0.0 0.069168 0.198568 0.318466 0.422616 0.405141 0.676923 0.508169 0.455366