Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02087 ATGAGTGCCGTCAACATCACTAACGTCACCGTCTTGGATAACCCTGCCGCATTTCTGAATCCATTTCAGTTCGAGATCTCATATGAGTGCTTAACTCCGCTTAAAGACGATCTAGAATGGAAACTCACCTATGTCGGATCTGCCGAGGATGAAACCTATGATCAGCTTTTGGAGAGTGTGCTCGTTGGACCTGTTAACGTTGGCAACTACCGTTTTGTTCTTCAGGCAGACCCTCCGGATCCGTCAAAAATCCGGGAAGAAGACATCACGGGGGTCACAGTACTGTTGTTAACATGTTCATACATGGGACAAGAATTTATAAGAGTAGGATATTATGTGAACAACGATTATGATGATGAACAGCTTCGTGAGGAACCTCCACCAAAAGTTTTGGTGGAAAGGATCCAAAGAAACATTCTTGCTGACAAGCCCAGAGTCACCAAGTTCCCAATCAATTTTCATCCGGAGAACTCTGAACATGGTGGAGAGCCAAATTCGTCTCCACCAGCTGAAACCATCAACAACGAAGAAGAAGAAGAATTGCAGGCATCGCCATTGCCATCGCCATTGCCATCGCCATCACCACCACCATCAGCTGCATCTGATGAACCATCTCTGGAACAGGATGCCGTTGATACTGAAGCTCAGCCCTCAGTCCGGCAACCTAAGGTTTGA 675 46.52 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDEQLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEPNSSPPAETINNEEEEELQASPLPSPLPSPSPPPSAASDEPSLEQDAVDTEAQPSVRQPKV 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14468000 14470410 - CmaCh04G020870.1 Cma04g02087 293168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02087 224 PANTHER ANTI-SILENCING PROTEIN 1 1 185 IPR006818 GO:0005634|GO:0006325
Cma04g02087 224 MobiDBLite consensus disorder prediction 186 200 - -
Cma04g02087 224 SUPERFAMILY ASF1-like 1 153 IPR036747 GO:0005634|GO:0006325
Cma04g02087 224 Pfam ASF1 like histone chaperone 1 153 IPR006818 GO:0005634|GO:0006325
Cma04g02087 224 Gene3D - 1 157 IPR036747 GO:0005634|GO:0006325
Cma04g02087 224 MobiDBLite consensus disorder prediction 146 224 - -
Cma04g02087 224 PANTHER HISTONE CHAPERONE ASF1B-RELATED 1 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02087 K10753 ASF1; histone chaperone ASF1 - csv:101205383 347.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02087 Cma-Chr4:14468000 Cma04g02985 Cma-Chr4:19558430 7.26E-101 dispersed
Cma15g00066 Cma-Chr15:327019 Cma04g02087 Cma-Chr4:14468000 4.98E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02047 . . . . . . . . . . . Cmo04g02189 . Cma04g02087 . Car04g02026 . . . Bhi12g00866 . . . Hepe02g2678 . Lcy10g1456 Cla01g00588 Cam01g0614 Cec01g0605 Cco01g0630 Clacu01g0606 Cmu01g0579 Cre09g1926 Lsi09g00637 . Chy09g00877 Cme09g01410
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002121 2 3 2 3 1 2 3 2 2 2 2 2 3 2 2 3 2 3 0 2 2 1 2 2 2 2 2 4 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02087 Cma_Chr04 FPKM 8.195238 7.762837 7.162389 7.201426 9.386436 9.1178 10.02257 3.371923 3.098872 2.838439