Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02088 ATGGCTACACGCAGACTCTTATCTTCTCTGCTCCGATCGTCGGCACGGCGGTCTTCGTTTAGATCTCCGATCTCATCTCCTAATCCCAGGATACCATTGTCTCACACTTCACGCGCTTCCCCATATGGCTACCTCCTCAGCCGTGTGGCTCAGTACGCTACCTCTGCAGCTGCGGCTTCACCGCCGTCTCCACCTTCACCTGCTAAATCGGACGCTGGAAGGAGTGGAAAAATCACCGATGAGTTCACTGGAGCTGGCGCGATTGGTCAGGTTTGTCAGGTGATTGGAGCTGTCGTCGATGTCAGATTCGTCGATGGGTTGCCTCCAATTCTGACGGCGCTTGAGGTGCTTGATCACTCGATCCGGTTGGTGCTGGAGGTGGCGCAGCATTTGGGAGAGAATATGGTTAGGACTATTGCTATGGATGGGACGGAAGGTCTCGTTCGAGGGCAGAAAGTGCTCAACACTGGTTCTCCTATCACTGTTCCAGTTGGTAGGGCTACTCTTGGACGTATTATAAATGTCATCGGAGAGCCTATTGATGAGAAAGGCGACCTTAAGACCGACCACTATTTGCCTATCCACAGAGAAGCCCCGGCCTTTGTGGAGCAAGCAACCGAGCAGCAAATTCTTGTAACTGGTATTAAGGTTGTTGATCTTCTTGCTCCATATCAAAGAGGAGGAAAGATTGGGCTCTTTGGTGGAGCTGGTGTGGGAAAGACTGTGCTTATCATGGAACTTATCAACAATGTTGCAAAAGCACATGGTGGTTTCTCCGTTTTTGCTGGTGTCGGAGAACGCACTCGTGAGGGTAACGATTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGACAAACAGGCTGATAGCAAATGTGCTCTTGTATATGGACAAATGAACGAACCCCCTGGTGCACGTGCTCGAGTTGGCCTTACTGGACTAACTGTGGCCGAACACTTCCGTGATGCTGAAGGACAGGACGTGCTTCTCTTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTGTCTGCACTACTTGGGCGTATTCCATCTGCTGTTGGTTACCAACCAACATTAGCTACTGATTTGGGAGGCCTTCAAGAACGTATTACCACCACTAAGAAAGGATCTATTACATCCGTACAAGCTATTTATGTGCCTGCTGACGATTTGACTGATCCTGCTCCTGCTACCACGTTTGCTCACTTGGATGCTACAACTGTGTTGTCGCGTCAGATTTCAGAGCTTGGTATCTATCCTGCTGTGGATCCTCTAGATTCTACATCTCGTATGCTCTCTCCTCATATTTTGGGAGAGGACCATTACAATACTGCTCGTGGAGTACAGAAGGTTCTTCAGAACTACAAGAATTTGCAAGATATTATTGCCATTTTGGGGATGGATGAGCTTAGTGAAGACGATAAGTTAACTGTTGCCCGTGCTCGTAAAATCCAACGGTTCCTGAGCCAGCCTTTCCATGTTGCAGAAGTATTTACTGGAGCACCTGGAAAATATGTGGAGCTGAAAGAGAGTGTTAACAGTTTCCAGGGAGTTTTGGATGGGAAATACGACGACCTTTCCGAACAATCGTTCTACATGGTTGGAGGCATTGAAGAGGTGATTGCAAAGGCGGAGAAGATTGCCAAGGAATCTGCTGCCTAG 1680 48.33 MATRRLLSSLLRSSARRSSFRSPISSPNPRIPLSHTSRASPYGYLLSRVAQYATSAAAASPPSPPSPAKSDAGRSGKITDEFTGAGAIGQVCQVIGAVVDVRFVDGLPPILTALEVLDHSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQKVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDLKTDHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVNSFQGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKIAKESAA 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14473302 14477697 + CmaCh04G020880.1 Cma04g02088 293169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02088 559 MobiDBLite consensus disorder prediction 56 77 - -
Cma04g02088 559 ProSitePatterns ATP synthase alpha and beta subunits signature. 426 435 IPR020003 GO:0005524
Cma04g02088 559 PIRSF ATPase_subunit_beta 6 559 - -
Cma04g02088 559 Hamap ATP synthase subunit beta [atpB]. 86 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Cma04g02088 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 441 IPR027417 -
Cma04g02088 559 CDD F1-ATPase_beta 159 440 - -
Cma04g02088 559 Pfam ATP synthase F1 beta subunit 1 48 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Cma04g02088 559 CDD ATP-synt_F1_beta_C 442 549 - -
Cma04g02088 559 Gene3D - 160 437 IPR027417 -
Cma04g02088 559 Gene3D ATP synthase, F1 beta subunit 1 52 IPR042079 -
Cma04g02088 559 Gene3D - 77 159 - -
Cma04g02088 559 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 558 - -
Cma04g02088 559 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 438 554 - -
Cma04g02088 559 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 86 159 IPR036121 GO:0046034|GO:1902600
Cma04g02088 559 MobiDBLite consensus disorder prediction 13 35 - -
Cma04g02088 559 CDD ATP-synt_F1_beta_N 87 160 - -
Cma04g02088 559 TIGRFAM atpD: ATP synthase F1, beta subunit 88 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Cma04g02088 559 MobiDBLite consensus disorder prediction 13 38 - -
Cma04g02088 559 SMART AAA_5 226 498 IPR003593 -
Cma04g02088 559 Gene3D - 438 559 IPR024034 -
Cma04g02088 559 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 214 435 IPR000194 GO:0005524
Cma04g02088 559 PANTHER ATP SYNTHASE 3 558 - -
Cma04g02088 559 Pfam ATP synthase alpha/beta family, beta-barrel domain 91 157 IPR004100 GO:0046034|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02088 K02133 ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta [EC:7.1.2.2] - csv:101205618 959.518
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02088 Cma18g00985 CCT
Cma04g02088 Cma18g00985 ECH
Cma04g02088 Cma15g00938 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02088 Cma-Chr4:14473302 Cma19g00752 Cma-Chr19:7482281 1.84E-28 dispersed
Cma11g00959 Cma-Chr11:5061279 Cma04g02088 Cma-Chr4:14473302 1.00E-17 dispersed
Cma17g00410 Cma-Chr17:2423543 Cma04g02088 Cma-Chr4:14473302 2.96E-15 dispersed
Cma20g01035 Cma-Chr20:7608042 Cma04g02088 Cma-Chr4:14473302 3.98E-08 dispersed
Cma04g01474 Cma-Chr4:7505760 Cma04g02088 Cma-Chr4:14473302 1.83E-52 transposed
Cma15g00938 Cma-Chr15:4979130 Cma04g02088 Cma-Chr4:14473302 0 wgd
Cma18g00985 Cma-Chr18:8308881 Cma04g02088 Cma-Chr4:14473302 0 wgd
Cma04g01473 Cma-Chr4:7504530 Cma04g02088 Cma-Chr4:14473302 3.29E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g390 . Blo16g00724 Bda01g01841 Bda11g00156 Bpe13g01042 . . . Cmo04g01546 Cmo18g00993 . Cma18g00985 Car04g01533 Car18g00906 Sed06g1923 Cpe09g00332 . Bhi07g01249 Tan04g0788 Cmetu03g1471 Lac13g0552 Hepe01g1147 . . Cla05g02261 Cam05g2430 Cec05g2447 Cco05g2493 Clacu05g2419 Cmu05g2286 Cre05g2404 Cone13ag0789 Cone19ag0792 Cone6ag0416 Cone9ag0439 Lsi04g00205 Csa05g02046 Chy10g01193 Cme10g00209 . Blo11g01023 . Bda11g00156 . Bpe02g02015 . Bma06g01100 . Cmo04g02190 Cmo15g00978 Cma04g02088 Cma15g00938 Car04g02027 Car15g00881 Cpe13g00384 . Bhi12g00867 . . . Hepe02g2675 . Lcy10g1453 Cla01g00589 Cam01g0615 Cec01g0606 Cco01g0631 Clacu01g0607 Cmu01g0580 Cre09g1925 Lsi09g00638 . Chy09g00876 Cme09g01409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000576 6 4 5 5 3 4 4 3 3 2 3 2 4 3 3 7 4 5 2 4 2 0 2 2 3 3 3 6 3 2 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02088 Cma_Chr04 FPKM 102.942505 112.634254 66.50618 67.607933 103.249359 104.767502 100.680557 43.716267 40.940109 44.485439