Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02089 ATGGCAATTTTGCCCATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCCGGCTCCTCCCCGCCTCGTCCTCCTTTCGTGCGAGAATTTGACATGAACCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGAAGAAGAAGAGAGCTGCATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACAGAGCAAAACCGCCGTCTCCGGCAGGAACTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACCGCGGTCGTCTCAGGTCACGGCCGACAGCCACCCCTCCCGATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGTGTAAGTGCATCCACTATAACATACGGTAAAGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA 642 52.49 MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCERVSASTITYGKGASSASTMPPEAFLSALKLRQPS 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14499939 14501662 + CmaCh04G020890.1 Cma04g02089 293170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02089 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 191 - -
Cma04g02089 213 PANTHER - 1 191 - -
Cma04g02089 213 Gene3D - 67 113 - -
Cma04g02089 213 SUPERFAMILY Homeodomain-like 55 118 IPR009057 -
Cma04g02089 213 Pfam Homeobox associated leucine zipper 117 151 IPR003106 GO:0006355|GO:0043565
Cma04g02089 213 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Cma04g02089 213 CDD homeodomain 60 118 IPR001356 GO:0003677
Cma04g02089 213 Coils Coil 130 153 - -
Cma04g02089 213 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Cma04g02089 213 SMART halz 117 160 IPR003106 GO:0006355|GO:0043565
Cma04g02089 213 SMART HOX_1 59 121 IPR001356 GO:0003677
Cma04g02089 213 Pfam Homeodomain 61 115 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00039 Cma04g02089 CCT
Cma04g02089 Cma15g00941 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02089 Cma-Chr4:14499939 Cma08g00556 Cma-Chr8:3178646 8.76E-48 dispersed
Cma04g00039 Cma-Chr4:215669 Cma04g02089 Cma-Chr4:14499939 1.42E-77 transposed
Cma15g00941 Cma-Chr15:4997473 Cma04g02089 Cma-Chr4:14499939 6.10E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34925 PF00046 Homeodomain 9.00E-17 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02089 K09338 - csv:101206325 276.174