Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02103 ATGGCGGCCTCCGCTCAACAGACTCCTTTCTTACGCTCCCGTCAGCCCTCCAACACTGGCGGCTCTACTTCCCCCATCGGCCCCCTCGCCGTTCTCTTGGGCCGTGCCACTGGCCGCCGTGGAACTTCTATGGTAGTACGAGAGACGGCGGCGCGTGAACTTGAAGAGCGCCGCATCGATTTGGGCTACTCCAAGCCGGTTGTGGCGGTTGACATTGCGTGGAATTTGGCTTTCGTTTTCGTTTCGTTGGGTGTGCTTATTCATTCGGTCGATGAAAAACCCAATACGCCAATTCGGCTTTGGATTTTAGTTTATGTGGCTCAGTGCTTGGTGCACTCTGTGCTTGTGTGGTTAGAGTTTAGAAGGAGGAATGCGAGGAGGTCTATGGATATGGAGACGCCGCAACACCCGCAACCTGATATTGACGGATATGTTGCTAATGAAAGCAATGACGAAGATGGTAGCCCGAGGAATCTGTCCGGGGTTGCCAGAAGATGTGAGACATTGAACACCCTGGTATCGTTAATTTGGTGGTTGCTTGGCTTTTATTGGGTCATGGCTGGTGGTAACCTCCTCCTGCAGAATGCTCCATCTTTATACTGGCTGGCTGTCGTATTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGAATAGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGCAGGAAGGTGCAACTGATGCAGATTTAAGTACTCTTTCTAAGTATAGATATCAAGTATCCAACAATCCTTCTCCCGGGGACGGGTTGATGGTTCCAATAGAAACAAGCAGCCGATACTTGACGACTGAACATGTTCTATTACGAGAGGATGCGGAGTGTTGTATATGTCTTAGTTCATACGAGGATGGAGTCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTACACGTGTAGCTCAAAATGGCTGAAGATGAATGCAACCTGCCCTCTGTGCAAGTACAACATATTAAAAAACTGTGAACCCGTGTAA 1050 48.38 MAASAQQTPFLRSRQPSNTGGSTSPIGPLAVLLGRATGRRGTSMVVRETAARELEERRIDLGYSKPVVAVDIAWNLAFVFVSLGVLIHSVDEKPNTPIRLWILVYVAQCLVHSVLVWLEFRRRNARRSMDMETPQHPQPDIDGYVANESNDEDGSPRNLSGVARRCETLNTLVSLIWWLLGFYWVMAGGNLLLQNAPSLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQQEGATDADLSTLSKYRYQVSNNPSPGDGLMVPIETSSRYLTTEHVLLREDAECCICLSSYEDGVELHALPCNHHFHYTCSSKWLKMNATCPLCKYNILKNCEPV 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14704759 14710844 + CmaCh04G021030.1 Cma04g02103 293184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02103 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 344 IPR013083 -
Cma04g02103 349 MobiDBLite consensus disorder prediction 1 25 - -
Cma04g02103 349 Pfam Ring finger domain 297 339 IPR001841 -
Cma04g02103 349 MobiDBLite consensus disorder prediction 129 157 - -
Cma04g02103 349 PANTHER TARGET OF ERK KINASE MPK-1 5 345 - -
Cma04g02103 349 MobiDBLite consensus disorder prediction 1 28 - -
Cma04g02103 349 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Cma04g02103 349 SMART ring_2 298 338 IPR001841 -
Cma04g02103 349 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE 5 345 - -
Cma04g02103 349 SUPERFAMILY RING/U-box 284 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02103 Cma-Chr4:14704759 Cma14g02015 Cma-Chr14:14098883 6.21E-106 dispersed
Cma15g00981 Cma-Chr15:5540924 Cma04g02103 Cma-Chr4:14704759 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02103 - K13148 cmo:103504433 561.222