Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02103 | ATGGCGGCCTCCGCTCAACAGACTCCTTTCTTACGCTCCCGTCAGCCCTCCAACACTGGCGGCTCTACTTCCCCCATCGGCCCCCTCGCCGTTCTCTTGGGCCGTGCCACTGGCCGCCGTGGAACTTCTATGGTAGTACGAGAGACGGCGGCGCGTGAACTTGAAGAGCGCCGCATCGATTTGGGCTACTCCAAGCCGGTTGTGGCGGTTGACATTGCGTGGAATTTGGCTTTCGTTTTCGTTTCGTTGGGTGTGCTTATTCATTCGGTCGATGAAAAACCCAATACGCCAATTCGGCTTTGGATTTTAGTTTATGTGGCTCAGTGCTTGGTGCACTCTGTGCTTGTGTGGTTAGAGTTTAGAAGGAGGAATGCGAGGAGGTCTATGGATATGGAGACGCCGCAACACCCGCAACCTGATATTGACGGATATGTTGCTAATGAAAGCAATGACGAAGATGGTAGCCCGAGGAATCTGTCCGGGGTTGCCAGAAGATGTGAGACATTGAACACCCTGGTATCGTTAATTTGGTGGTTGCTTGGCTTTTATTGGGTCATGGCTGGTGGTAACCTCCTCCTGCAGAATGCTCCATCTTTATACTGGCTGGCTGTCGTATTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGAATAGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGCAGGAAGGTGCAACTGATGCAGATTTAAGTACTCTTTCTAAGTATAGATATCAAGTATCCAACAATCCTTCTCCCGGGGACGGGTTGATGGTTCCAATAGAAACAAGCAGCCGATACTTGACGACTGAACATGTTCTATTACGAGAGGATGCGGAGTGTTGTATATGTCTTAGTTCATACGAGGATGGAGTCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTACACGTGTAGCTCAAAATGGCTGAAGATGAATGCAACCTGCCCTCTGTGCAAGTACAACATATTAAAAAACTGTGAACCCGTGTAA | 1050 | 48.38 | MAASAQQTPFLRSRQPSNTGGSTSPIGPLAVLLGRATGRRGTSMVVRETAARELEERRIDLGYSKPVVAVDIAWNLAFVFVSLGVLIHSVDEKPNTPIRLWILVYVAQCLVHSVLVWLEFRRRNARRSMDMETPQHPQPDIDGYVANESNDEDGSPRNLSGVARRCETLNTLVSLIWWLLGFYWVMAGGNLLLQNAPSLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQQEGATDADLSTLSKYRYQVSNNPSPGDGLMVPIETSSRYLTTEHVLLREDAECCICLSSYEDGVELHALPCNHHFHYTCSSKWLKMNATCPLCKYNILKNCEPV | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 14704759 | 14710844 | + | CmaCh04G021030.1 | Cma04g02103 | 293184 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02103 | 349 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 245 | 344 | IPR013083 | - | |
Cma04g02103 | 349 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cma04g02103 | 349 | Pfam | Ring finger domain | 297 | 339 | IPR001841 | - | |
Cma04g02103 | 349 | MobiDBLite | consensus disorder prediction | 129 | 157 | - | - | |
Cma04g02103 | 349 | PANTHER | TARGET OF ERK KINASE MPK-1 | 5 | 345 | - | - | |
Cma04g02103 | 349 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cma04g02103 | 349 | ProSiteProfiles | Zinc finger RING-type profile. | 298 | 339 | IPR001841 | - | |
Cma04g02103 | 349 | SMART | ring_2 | 298 | 338 | IPR001841 | - | |
Cma04g02103 | 349 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE | 5 | 345 | - | - | |
Cma04g02103 | 349 | SUPERFAMILY | RING/U-box | 284 | 344 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02103 | Cma-Chr4:14704759 | Cma14g02015 | Cma-Chr14:14098883 | 6.21E-106 | dispersed | |
Cma15g00981 | Cma-Chr15:5540924 | Cma04g02103 | Cma-Chr4:14704759 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02103 | - | K13148 | cmo:103504433 | 561.222 |