Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02112 ATGGGTGATGTGAAGGACAAGGTTAAGGGCTTCATGAAACGCTTCAATAATCCCTTGACCTCATCTTCTTCTACCAGTTTCAAGGGCCCGGGAAGAGTTTTAGGATCGTCTTCTTCCGGGTCGACCACTTCTTTGCCTACCCGCCCATTGCACAATCCCATTTCAAACCCGAATCTGGTCAAGCCCCCGGTAGCGAATTCAATTTCCGCGGCTCCAACCCGGCCACATCTCTCGATTAAATCGAGCCCAGAACGTTCCCCGGCTGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGCAAAAAATCTGGAAATGGGTATTCGTTAAATGTGTTCGAATGTCCGATTTGTGGCCAAAATTACAGGTCGGAAGAAGAGGTTTCGGTGCACGTAGATAGCTGTGTCGATGATAATACAGCCAGGAGACCAGCAGATCTGCTGCTCACAAATGATGCAGAATCCCCGAGTGAATTGGAGGGTTGTCTTGGCACTTTCTTGTCAGGTAAGCCCTCACAAGGTTCACTGAAAATTATTCTTACGCTTTTGAGGAACATAATTCGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGCGAGGCTGTCGGGGGAGTGGAATTGTTGGAGTTTGTAGGTTTTAAATTGCAAGAACAAGATGGTGAAATGTGGGCAACCATGGAAATTCCGACAGAGGAAGAAATTAACATACTAAGCAAGGTAATAGATTCCATTGATCAACCAAAGCTTGATGAACAGGAAAAGAGAGGCAGCAGCACTGCATCCACTGATCAACTGATTGAGCCAAAGAAGGTAGACAGACAGACTCGGGTATTCTTTGCAATCCCTGAAAACGTTGCAGCAAACATTGAGCTACCAGACTCATTTTACAAACTCTCTATTGAAGAGGTTAAAAGAGAAGCTGTAATGAGGAAGCAAAAGATTGCAGAATCTCAGCTTTTGGTACCCAAATCATACAAGGAAAAGCAAGCCAAAGCTGCTCGGAGAAAGTACAATAGAACAGTGATCAGAATTCAGTTTCCTGATGGTGTGGTACTTCAAGGGGTTTTTTCTCCTTGGGAACCAACAAGTGCTCTATATGAGTTTGTAAGCACAGCACTGAAAGAACCGAGTTTGGAGTTCGAGTTGATACAACCTGTCGGTGTTAAACGACGTACAATCGCCCATTTTCCAGCAGTAGGAGAGAAAACTAAAACACTAGATGATCTGGAGTTGGTTCCCTCAGCTCTTGTCAAGTTTAGACCCATTGAAACAGATTCTGTTGTGTTCACAGGTTTGTGTAATGAACTCCTTGAGATCATTGAACCACTCGTTAGCGGTTCAGCGGTAGCTCCTCCTGCACAAGGTTAA 1401 44.4 MGDVKDKVKGFMKRFNNPLTSSSSTSFKGPGRVLGSSSSGSTTSLPTRPLHNPISNPNLVKPPVANSISAAPTRPHLSIKSSPERSPADGFDPFDSFITSGKKSGNGYSLNVFECPICGQNYRSEEEVSVHVDSCVDDNTARRPADLLLTNDAESPSELEGCLGTFLSGKPSQGSLKIILTLLRNIIREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEQDGEMWATMEIPTEEEINILSKVIDSIDQPKLDEQEKRGSSTASTDQLIEPKKVDRQTRVFFAIPENVAANIELPDSFYKLSIEEVKREAVMRKQKIAESQLLVPKSYKEKQAKAARRKYNRTVIRIQFPDGVVLQGVFSPWEPTSALYEFVSTALKEPSLEFELIQPVGVKRRTIAHFPAVGEKTKTLDDLELVPSALVKFRPIETDSVVFTGLCNELLEIIEPLVSGSAVAPPAQG 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14756552 14759723 + CmaCh04G021120.1 Cma04g02112 293193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02112 466 Pfam UBX domain 347 428 IPR001012 GO:0005515
Cma04g02112 466 CDD UBX_UBXN6 351 431 - -
Cma04g02112 466 Gene3D - 168 258 - -
Cma04g02112 466 MobiDBLite consensus disorder prediction 15 63 - -
Cma04g02112 466 SUPERFAMILY PUG domain-like 172 234 IPR036339 -
Cma04g02112 466 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 456 - -
Cma04g02112 466 SMART PGNneu 174 241 - -
Cma04g02112 466 SMART c2hc_5 112 136 IPR006642 GO:0003677|GO:0006281
Cma04g02112 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 144 IPR013087 -
Cma04g02112 466 SUPERFAMILY Ubiquitin-like 317 430 IPR029071 -
Cma04g02112 466 Pfam PUB domain 173 238 IPR018997 -
Cma04g02112 466 Gene3D - 340 432 - -
Cma04g02112 466 ProSiteProfiles UBX domain profile. 346 430 IPR001012 GO:0005515
Cma04g02112 466 SMART ubx_3 343 432 IPR001012 GO:0005515
Cma04g02112 466 CDD PUB 163 257 - -
Cma04g02112 466 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02112 Cma-Chr4:14756552 Cma05g00670 Cma-Chr5:3443900 4.37E-08 dispersed
Cma15g00974 Cma-Chr15:5471654 Cma04g02112 Cma-Chr4:14756552 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02112 K14011 - csv:101209321 746.503