Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02117 ATGGCCACTGCCGATCAACTCAACAACCCACCGCAGCCACCTCCTCCGGCCCCCTCACTCCCTCACTACCCCGAGATGATTATGTCAGCGATCGACGCTCTCAACGACAAAAACGGAGTGAGCAAATCGGTGCTTACGAAGCAGATCGAGTCCACCTACGGCGATCTGCCCCCAGCTTTCACTACGCTCCTTACCCATCACTTGGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAACCCGATCCCAACGCGCCGCCGAAGCGTGGGCGTGGTCGTCCTCCCAAGCCTAAAGTCCCTCTCCCGCCGGGCACCGTCGTATCTCCTCCACGCCCACGTGGCCGCCCACCCAAATCCAGAGATCCATTCGCTCCCATTTCGCAGCCCAAGAAGAAACCCTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCAAAGCCAGCGCCGACGTCGGTTCCGGTTGCTAGTCCGCCCCGAGGTAGAGGGCGGCCGCCGAAGATTAAGCCAGCCGTCGCCCCAGTTGGATGGGGTAGCATAGCACACCGCCCCTATCGATGGCCAGAAGCCCGGTACTTCTGGCCTCCGCAAGAAGTTTTGTACTTCTCTTCAACATTGTCGGATGTTCCGAGTTCGATCATATTGGAAAACTGCGCTAGATCTGGTGCCTTAATTAACTGCCTTAGAATGGTTATGGTAAAAGTATTCATTCAACCGGAGTACTTGGAGAATTTTGTTCAGTCAACATTTAACGCACTAACTGCTGAAAAAGTCAGAGGTGCTACACTTGTTGTATCTGGAGATGGACGCTATTATTCAAAGGATGCTATTCAGATTATAATCAAGATGGCTGCAGCAAATGGGGCACGCCGTATTTGGGTTGGTCAAAATGGCTTGCTATCAACTCCTGCTGTGTCTGCTGTTATACGTGAAAGAGTCGGGGTTGATGGATCCAGAGCATCAGGAGCATTTATTTTGACTGCAAGTCACAATCCAGGAGGTCCCCATGAGGATTTCGGTATTAAATACAACATGGAAAATGGTGGCCCTGCTCCGGAGGGAATTACTGATAAGATCTACGAAAACACAAAGTCAGTAAAGGAGTACTTAATTGCTGAAGATCTACCCAACGTGGACATTTCTGCAATAAGTGTTTCTAACTTTTGCGGACCTGAAGGACAATTTGATGTTGAGGTTTTTGATTCAGCCAGTGACTATGTGAAGCTGATCAAGTCAATATTTGATTTTGAATCTATCCGCAAGCTTCTATCCTCTCCCAAGTTCTCATTCTGTTATGATGCTCTACATGGTGTCGCTGGAGCTTATGCAAAACGTATTTTTGTGGAAGAGCTTGGTGCGCAAGAAAGCTCATTATTGAACTGCGTACCAAAGGAGGACTTTGGAGGAGGTCATCCTGACCCCAATTTGACTTATGCCAAGGAATTGGTTGCTCGTATGGGATTGGGTAAATCAAGCTCTGGACAAGAACCTCCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGCAATATGGTCCTTGATTTTGTCACTCCTTCAGACTCTGTTGCCATTATTGCTGCTAATGCTGTTGAAGCTATTCCATACTTCTCTGCTGGTTTGAAGGGTGTCGCCAGGAGCATGCCAACCTCTGCTGCACTAGATGTGGTTGCCAAAAACTTGAACTTGAAGTTTTTTGAGGTGCCCACCGGCTGGAAATTTTTTGGTAATTTAATGGATGCAGGAATGTGCTCCGTCTGTGGGGAAGAAAGTTTTGGAACTGGATCTGACCATATTCGTGAGAAAGATGGAATTTGGGCAGTTTTAGCTTGGTTATCTATTCTCGCTTTTAAAAACAAGGGCAACCTTAATGGTGGAAAGCTTGTGACTGTTGAAGACATAGTTCGCCAACATTGGGCCACTTACGGTCGTCATTATTATACTAGATATGATTACGAGAATGTTGATGCTGGAGCAGCAAAGGAACTGATGGCAAATTTGGTGAAGCTGCAATCTTCACTTGATGAAGTTAATGGGATTGTCAAGGGAATCCGTTCAGATGTGTCAAAGGTTGTTCATGGTGATGAATTTGAGTATAAAGATCCTGTTGATGGTTCCATTTCAAAGCACCAGGGCATTCGATATTTGTTTGAGGATGGTTCACGACTGGTGTTCCGCCTGTCTGGAACTGGCTCTGAAGGTGCAACAATTCGGCTCTACATTGAGCAATATGAGAAGGATCCATCAAAAACGGGGAGAGATTCTCAGGAAGCTCTTGCTCCTCTGGTGGAAATTGCTCTTAAGCTCTCAAAAATGCAAGAATTCACCGGCCGATCTGCTCCTACCGTCATTACATAA 2382 47.61 MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGWGSIAHRPYRWPEARYFWPPQEVLYFSSTLSDVPSSIILENCARSGALINCLRMVMVKVFIQPEYLENFVQSTFNALTAEKVRGATLVVSGDGRYYSKDAIQIIIKMAAANGARRIWVGQNGLLSTPAVSAVIRERVGVDGSRASGAFILTASHNPGGPHEDFGIKYNMENGGPAPEGITDKIYENTKSVKEYLIAEDLPNVDISAISVSNFCGPEGQFDVEVFDSASDYVKLIKSIFDFESIRKLLSSPKFSFCYDALHGVAGAYAKRIFVEELGAQESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSSSGQEPPEFGAAADGDADRNMVLDFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAFKNKGNLNGGKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVKLQSSLDEVNGIVKGIRSDVSKVVHGDEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEIALKLSKMQEFTGRSAPTVIT 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14795299 14807050 - CmaCh04G021170.1 Cma04g02117 293198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02117 793 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 527 650 IPR005846 GO:0005975|GO:0016868
Cma04g02117 793 Gene3D - 633 793 - -
Cma04g02117 793 Gene3D - 16 95 IPR036388 -
Cma04g02117 793 MobiDBLite consensus disorder prediction 102 119 - -
Cma04g02117 793 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 704 756 IPR005843 GO:0016868|GO:0071704
Cma04g02117 793 MobiDBLite consensus disorder prediction 149 173 - -
Cma04g02117 793 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 331 340 IPR016066 GO:0000287
Cma04g02117 793 PANTHER BNAA09G30060D PROTEIN 240 327 - -
Cma04g02117 793 SUPERFAMILY Phosphoglucomutase, first 3 domains 241 442 IPR016055 GO:0005975|GO:0016868
Cma04g02117 793 MobiDBLite consensus disorder prediction 83 180 - -
Cma04g02117 793 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 237 377 IPR005844 GO:0005975|GO:0016868
Cma04g02117 793 SUPERFAMILY Phosphoglucomutase, C-terminal domain 652 793 IPR036900 GO:0016868|GO:0071704
Cma04g02117 793 SMART h15plus2 17 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma04g02117 793 PRINTS AT-hook-like domain signature 114 125 IPR017956 GO:0003677
Cma04g02117 793 PRINTS AT-hook-like domain signature 94 104 IPR017956 GO:0003677
Cma04g02117 793 PRINTS AT-hook-like domain signature 142 152 IPR017956 GO:0003677
Cma04g02117 793 MobiDBLite consensus disorder prediction 1 21 - -
Cma04g02117 793 PRINTS Phosphoglucomutase/phosphomannomutase family signature 330 344 IPR005841 GO:0005975|GO:0016868
Cma04g02117 793 PRINTS Phosphoglucomutase/phosphomannomutase family signature 471 484 IPR005841 GO:0005975|GO:0016868
Cma04g02117 793 PRINTS Phosphoglucomutase/phosphomannomutase family signature 435 454 IPR005841 GO:0005975|GO:0016868
Cma04g02117 793 PRINTS Phosphoglucomutase/phosphomannomutase family signature 506 521 IPR005841 GO:0005975|GO:0016868
Cma04g02117 793 SUPERFAMILY Phosphoglucomutase, first 3 domains 514 657 IPR016055 GO:0005975|GO:0016868
Cma04g02117 793 Gene3D - 250 420 - -
Cma04g02117 793 Pfam linker histone H1 and H5 family 21 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma04g02117 793 Gene3D - 524 622 - -
Cma04g02117 793 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 19 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma04g02117 793 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 413 523 IPR005845 GO:0005975
Cma04g02117 793 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Cma04g02117 793 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Cma04g02117 793 SMART AT_hook_2 167 179 IPR017956 GO:0003677
Cma04g02117 793 SMART AT_hook_2 94 106 IPR017956 GO:0003677
Cma04g02117 793 SUPERFAMILY Winged helix DNA-binding domain 15 95 IPR036390 -
Cma04g02117 793 SUPERFAMILY Phosphoglucomutase, first 3 domains 412 523 IPR016055 GO:0005975|GO:0016868
Cma04g02117 793 CDD PGM1 241 793 - -
Cma04g02117 793 Gene3D - 421 523 - -
Cma04g02117 793 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 327 793 IPR045244 GO:0004614|GO:0005975
Cma04g02117 793 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 240 327 IPR045244 GO:0004614|GO:0005975
Cma04g02117 793 PANTHER BNAA09G30060D PROTEIN 327 793 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02117 K01835 pgm; phosphoglucomutase [EC:5.4.2.2] - csv:101218883 1041.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02117 Cma15g00965 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00376 Cma-Chr1:1891217 Cma04g02117 Cma-Chr4:14795299 4.93E-33 dispersed
Cma04g02117 Cma-Chr4:14795299 Cma15g01394 Cma-Chr15:8778243 0 dispersed
Cma15g00965 Cma-Chr15:5359067 Cma04g02117 Cma-Chr4:14795299 0 transposed
Cma15g00964 Cma-Chr15:5270576 Cma04g02117 Cma-Chr4:14795299 4.87E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g464 . . . . . . Bma14g01897 . . . . . . . . . Cpe01g01839 . . . . . . . . . . . . . . . . Cone6ag0384 Cone9ag0411 . Csa05g02011 . . Blo06g01007 Blo11g00973 . . . . . . . Cmo04g02216 Cmo15g01007 Cma04g02117 Cma15g00965 Car04g02059 Car15g00912 Cpe13g00359 . Bhi12g00924 . . . . . . Cla01g00622 Cam01g0650 Cec01g0643 Cco01g0668 Clacu01g0638 Cmu01g0612 Cre09g1890 Lsi09g00672 . Chy09g00838 Cme09g01370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005872 2 2 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02117 Cma_Chr04 FPKM 34.101433 36.801926 10.310602 10.320936 23.374701 20.922211 20.596142 2.566825 2.953462 2.548127