Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02121 ATGGTAACGGGCAAAGCAGGCGGTGAAGAAGCTGATTCAATCAATCAGAAGAAACCGGTTCACGCCATTTTCCATTCCCAAACCCTCTCATTCTCTTTCCACCTTCACCCAATTTTCTACCCACCTCTCCTCCACGGACCACAACCACTTTATCCGCCGCCGCCGTCAGAAGACAAGATGAAGAGGGAGCATCATCATCTTCATCCTCGCCCGGATCCGCCTTCCATGGCTGCCGCTCCTAATGGAGACACTTATTTGAATACTGGAAAGGCTAAGCTCTGGGAGGAGGACGCCCAGCTCGATGGAGGAATGGATGAGCTTCTCGCTGTTTTGGGTTACAAGGTTAAGTCGTCGGACATGGCGGAAGTTGCCCAGAAGCTCGAACAGCTTGAAGAAGCTATGTGTCAAGTTCAGGATACTGGGCTATCGCATCTAGCTTTCGATACTGTTCACTATAATCCCTCTGATCTGTCGACTTGGCTTGAAAGTATGATAACGGAGCTTCATCCGCCGCCTAGTTTTCCGCAGCCGCATCCCTCGCAGATGAACGATTCGTCGTTTTTAGCCCCGGCGGAATCCTCCACCATCACTTCCATTGATTACGACCCCCAACGACAGACCAGCAGCCTGATTTTTGAGGAGTCTTCCAGTTCTGATTACGACCTTAAAGCTATTACGAGCAGCGCGATTTATTCACCAAGAGAGAACAAGCGTTTGAAACCCTCGTCCGAGTCGGACTCGGATTTATTCTCTACCTCTGCGATTGGGGCATCCAATTCTGCAACTCGCCCCATAGTACTCGTCGACTCGCAGGAGAACGGAATTCAACTGGTTCATGCTTTGATGGCCTGCGCCGAAGCCGTGCAGCAGAACAATCTGAATCTGGCGGAGGCTCTGGTGAAGCGAATCGGGTACTTGGCGGTTTCTCAAGCAGGAGCGATGCGGAAGGTCGCCACGTTCTTTGCCGAAGCATTGGCACGCCGTATCTATAGGGTCTGCCCTGAAAATCCCCTCGATCATTCAATGTCCGATATGCTTCAATTGCATTTCTACGAGAGCAGTCCGTATTTGAAATTTGCACATTTCACCGCGAATCAAGCGATTCTTGAGGCCTTCGAAGGGAAGAAGCGCGTTCACGTAATCGATTTCTCGATGAACCAAGGGATGCAGTGGCCGGCTCTGCTTCAAGCCCTAGCTCTACGGCCGAGTGGTCCCCCAGCCTTCCGTCTTACCGGGATCGGACCTCCGGCGCCGGATAACTCCGATTACCTTCAAGATGTCGGTTGGAAACTCGCTAAATTAGCCGAAACCATCAATGTCGAGTTCGAATACAGAGGATTCGTGGCGAATAGCTTGGCGGATCTGGACGCGTCGATGCTGGAGCTCCGACCGAGCGAGGTGGAGTCCGTGGTGGTAAACTCAGTGTTCGAGTTGCATAAGCTACTGGCTCGGCCGGGCGCCATCGAAAAGGTTATGTCGGTAGTGAAGCAGATGAAGCCGGAGATCATGACGGTGGTGGAGCAGGAAGCCAACCACAATGGTCCGGTTTTCATGGATCGGTTCACTGAGTCACTCCACTACTACTCGACGCTTTTTGACTCGTTGGAGAGCTCGCCCAACAACCAGGACAAGATGATGTCCGAAATGTACCTCGGAAAGCAAATTTGCAACGTGGTGGCTTGTGAAGGCAGCGACCGAGTGGAGCGGCACGAGACTCTGACTCAGTGGCGAACTCGGTTGTGCTCCTCTGGGTTCGAACCCATCCACCTGGGCTCCAATGCATTCAAGCAAGCAAGCATGCTCCTCGCCCTATTCGGCAGCGGAGAAGGATACCGAGTGGAAGAGAACAACGGATCACTAACGCTGGGGTGGCACACCCGTCCCCTCATCGCCACATCCGCCTGGAAACTCGGGAACAACTCGGTGGTGGTAACTCACTGA 1941 52.96 MVTGKAGGEEADSINQKKPVHAIFHSQTLSFSFHLHPIFYPPLLHGPQPLYPPPPSEDKMKREHHHLHPRPDPPSMAAAPNGDTYLNTGKAKLWEEDAQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESMITELHPPPSFPQPHPSQMNDSSFLAPAESSTITSIDYDPQRQTSSLIFEESSSSDYDLKAITSSAIYSPRENKRLKPSSESDSDLFSTSAIGASNSATRPIVLVDSQENGIQLVHALMACAEAVQQNNLNLAEALVKRIGYLAVSQAGAMRKVATFFAEALARRIYRVCPENPLDHSMSDMLQLHFYESSPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNSDYLQDVGWKLAKLAETINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGAIEKVMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESSPNNQDKMMSEMYLGKQICNVVACEGSDRVERHETLTQWRTRLCSSGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLTLGWHTRPLIATSAWKLGNNSVVVTH 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14864086 14866661 + CmaCh04G021210.1 Cma04g02121 293202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02121 646 Pfam GRAS domain family 277 636 IPR005202 -
Cma04g02121 646 MobiDBLite consensus disorder prediction 56 71 - -
Cma04g02121 646 Pfam Transcriptional regulator DELLA protein N terminal 105 172 IPR021914 -
Cma04g02121 646 Gene3D - 103 168 IPR038088 -
Cma04g02121 646 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 80 637 IPR005202 -
Cma04g02121 646 MobiDBLite consensus disorder prediction 49 79 - -
Cma04g02121 646 ProSiteProfiles GRAS family profile. 268 636 IPR005202 -
Cma04g02121 646 PANTHER DELLA PROTEIN GAI1-RELATED 80 637 IPR030006 GO:0003712|GO:0005634
Cma04g02121 646 SMART DELLA_2 105 178 - -
Cma04g02121 646 Coils Coil 113 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02121 Cma-Chr4:14864086 Cma15g00743 Cma-Chr15:3614862 0 dispersed
Cma17g01037 Cma-Chr17:7493693 Cma04g02121 Cma-Chr4:14864086 2.76E-47 dispersed
Cma15g00959 Cma-Chr15:5172627 Cma04g02121 Cma-Chr4:14864086 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34927 PF03514 GRAS 1.70E-135 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02121 K14494 - csv:101204164 1053.89