Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02122 ATGGAACACTTCTTGGGTCTTCTCCGAATTCGGGTGCTTCGCGGTTCTAATCTGGCTGTTCGTGATACTCGTAGCAGTGATCCTTTTGTCGTCGTCACTATGGGCGATAAGAGTTTGAAGACCCGTGTGGTGAAAAATAATTGCAATCCTGAATGGAATGATGAACTGACTCTTTCTATTGCAGATCTTAGAACTCCAATCGGTTTATCAGTGTATGACAAAGACACAGTAACAGACCATGACAAAATGGGAGATGCCGTAATTGACATCGAACCATACATCGAATGTCTGAAGATGGGACTGGAAAACCTCCCAGAGGGGTGTGTGGTTAAGAGGGTATATCCAAGCAGAACAAACGACTTAGCTGATGAGAGCCAATGTGTTTGGAACAAAGGGAAAATTATACAGAACATGCACCTTAGGTTGAAGAATGTAGAGTGTGGTGAGGTGGAGATTCAACTCGAATGGATCGATGTTCCGGGATCTAAGGGTCTGCCGAAAGAGGGTATGAGCCACTTCTGA 522 44.64 MEHFLGLLRIRVLRGSNLAVRDTRSSDPFVVVTMGDKSLKTRVVKNNCNPEWNDELTLSIADLRTPIGLSVYDKDTVTDHDKMGDAVIDIEPYIECLKMGLENLPEGCVVKRVYPSRTNDLADESQCVWNKGKIIQNMHLRLKNVECGEVEIQLEWIDVPGSKGLPKEGMSHF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14870828 14873338 - CmaCh04G021220.1 Cma04g02122 293203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02122 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Cma04g02122 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Cma04g02122 173 Gene3D C2 domain 4 169 IPR035892 -
Cma04g02122 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Cma04g02122 173 SMART C2_3c 7 102 IPR000008 -
Cma04g02122 173 Pfam C2 domain 6 92 IPR000008 -
Cma04g02122 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 1 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02122 Cma-Chr4:14870828 Cma18g00074 Cma-Chr18:329922 1.81E-72 dispersed
Cma04g00062 Cma-Chr4:293140 Cma04g02122 Cma-Chr4:14870828 1.25E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02122 - - csv:101204404 305.064