Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02132 ATGGGTACGAATGGGAAGACGATCGAGGTTTTTGGATTCCGGCGAGAGGTGAGCGCCGGCGAGGTGAAGGAATTTATGGAGAATCACACCGGAGAGGGAACGGTATCGAAGGTGAGGATTTCGAAACCCAAGGACGGGAAAGGCCGGTTGACATTCGCGAGGGTGGAATTCAGGAGCAAGGTGGCGGCGGAGTACGTGGTGGAGAAGGCGGAGGCGGAGGAGGGGCTGTGGTTCGGAAGGTGGTATCTGAAGGCGAGGGGAGTGGAGAGGGAGATGAGGGTGGAGAGAATGGAGAAGGTGAGGGTGCAGTTGGGAAGCGTGATTTCGAAGGAAGAAATGAGGGTGATTTGGAGAGGGGAAGAGTGGAGCGTGGAATATGGAAATGGAATGAGGAAACTGTGGTTTTATTTGAGTTATGGGGTTGAAGATGATGACTATAAAATGGAGCTCCGGTTTGAGAACATTTTGGGAGTTCAGCTTCGTTGCCCTCACAATTCATCCTCCAATCTTTTTCTCATTCAGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCTTCTTCTTCGTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCGTCTTGTATTGGACAATCCTTCTCTCTGTGCTTGGAAGTTTCTCCTGGAGATCAGCTTCCTTCTTTCTTCCAAACTTTGGTCGGCTACAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGGTTCTGCTTTCTCTTCCACTTCAAATCTCGTTCCTATCGTTACTCCACCGCAACCATTTGATATCCCTTATAAAATTTTGTTCAAAATCAATGCCCTAGTTCAACATGGTTATCTTCCTGGATCAGCGCTGGATGATAAATTCTTCCGCCTGGTTGATCCCAGTCGATTTCGTTCTGACTACATTGAGTATGCCCTAGAAAAATTGTTTAGTTTGAAGGAATGTTGCTATGAACCACAGAAATGGCTCAAGCAGCAATATCTGTCATTCTGCAGCTCTATGCAGCTTCCATGGAAAGCTAATATTTCTTTGGATGATAGCCTCGTCTATGTGCATAGGGTTCAAATTACACCTGCTAAGGTGTATTTTCGTGGTCCGGAGGCGAATCTTTCTAACAGAGTAGTACGTCGATTTATTGATGATATAGATAATTTTCTTCGCGTGTCTTTTGTTGATGAGGAGTTGGATAAAATTCATTCCAGTGATCTGTCTCCCCGTACGTCTACTGAAAAGATTGAAAGAACTAGGGTTTATGATCGAATATTATCTGTTTTAAGAAATGGTATAGTCATTGGTGGCAAGAAGTTTGAGTTTCTTGCTTTCTCGGCAAGTCAACTTCGTGAAAATTCGTTTTGGATGTTTGCTTCGAGGGAGGGGCTTAATGCAGCAGATATCAGGGAGTGGATGGGTGACTTTCGTGAGATAAGAAATGTGGCGAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCGTCCAGAAAAACTTTGTGTGTTGAAGAAAATGAAATTGAAGTTATTCCTGATGCAGAAGTTGAACGGAAGAACATCAAATATTGTTTCTCTGATGGGATTGGAAAGATATCCGAAGCATTGGCTGAGATGGTTGCTGAAAAATGTGGTTTGATCAGTCATACACCATCTGCATTCCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTGTTGATCCCACATCCAAAAAGAAATTGTCATTAAGAAAGAGTATGTTGAAGTATATGTCACTTGACACTCAACTTGATGTTTTGTCATGGAGCAAGTACCAACCCTGTTTTCTCAACCGTCAGGTGATCAACCTTCTGTCCACTCTTGGAATTCGGGACGACGTTTTTGTGAAACAACAAAAGAAGGCTGTTGATCAACTTGATTCTATTCTAAGAGATCCATCGAAGGCATTAGAAGTGTTGGAATTGATGTCCCCGGGGGAAATGACTAGTGTTCTGAAGGACATGCTTTTGTTTTACAATCCACACGAAGAGCCTTTTCTAAATATGATGCTACGGACGTTTCGAGCAGATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTAGATGAAACCCGGACCCTTGAGTATGGGCAGGTGTTTATTCACTGCTCTGTCCCTGGGAGATCAAGCGAAAGTAATTTTGTTGTTAAAGGTAAAGTGGTGGTTGCTAAAAATCCCTGTTTACACCCAGGGGATGTGCGTGTGCTCGATGCCGTTGATGTGAAAACTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGAAAAGGCCTCACCCAAATGAATGCTCTGGGAGTGATTTAGATGGTGACTTATACTTTGTTTGTTGGGATCCGGAGTTGACTTGTATTAGACCAATTAAACCTATGAGCTACGAGCCTGCACCAACCATTCAGTTGGATCATGATGTGACACTTGAGGAAGTGCAGGAATACTTTGCCAACTACATGGTGAATGATGGTCTTGGTGGCATTGCAAATGCTCACACTGTCTTTGCTGATATGAAGCCTAAGAAGGCGATGAGTGCTGAATGCATTGAACTTGCAAAATTATTTTCAATTGCTGTTGACTTCCCGAAAACTGGTGTGCCAGCAAACTTGCCGCGCTCTCTTCGTGTCCATGAGTATCCAGACTTCATGGAAAAGCCTAATAAACGGACTTATATATCGAATGGTGTTATCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAGATATCAACAACATTGAAACCTTCACTAGGGAAGTTGCTGTCAAGTGCTACGATCCAGACATGGAAGTTATGGGTTTTGAAAATTATTTAAGTGAAGCTTTTGACTACAAAAGAATGTACGACTTCAAGTTGGGTAACCTAATGGATTATTATGGTATAGAGACAGAACCTGAATTAGTTAGTGGAAATATTTTGAGAATGGGAAAGTCTTTCGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAGGTCACTAAGAAAGGAGGCCAGGGGTTGGTTCAACGAGAAGGCAAGTAAGTCTATCTACAACAACAACAAGGGCGAAGACAATGAATATGCAAAAGCATCCGCTTGGTACCATGTTACGTATCACCCAAACTTCTGGGGTCGATACAATGAAGGCATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTTCTGATAAGCTTATTCAAATCAAAAGGGAGAAGATGGAGTCTTCCCCAGTGTCATCTCTGATACACAAATTTGGTAAGCTGAGTTTCTACTAG 3348 42.92 MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVAAEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVISKEEMRVIWRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPRIFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14906857 14911076 + CmaCh04G021320.1 Cma04g02132 293213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02132 1115 CDD RRM_SF 8 69 - -
Cma04g02132 1115 PANTHER RNA-DEPENDENT RNA POLYMERASE 5 1102 - -
Cma04g02132 1115 SUPERFAMILY RNA-binding domain, RBD 4 69 IPR035979 GO:0003676
Cma04g02132 1115 Pfam RNA dependent RNA polymerase 370 931 IPR007855 GO:0003968
Cma04g02132 1115 PANTHER RNA-DEPENDENT RNA POLYMERASE 5 1102 IPR007855 GO:0003968
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02132 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101205704 1782.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00090 Cma04g02132 CCT
Cma04g02132 Cma15g00901 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00090 Cma-Chr4:446317 Cma04g02132 Cma-Chr4:14906857 0 dispersed
Cma04g00091 Cma-Chr4:451848 Cma04g02132 Cma-Chr4:14906857 0 dispersed
Cma04g02132 Cma-Chr4:14906857 Cma10g00138 Cma-Chr10:619940 0 dispersed
Cma04g02132 Cma-Chr4:14906857 Cma15g00901 Cma-Chr15:4636912 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g508 . . . . . . Bma14g01918 . . . . Cma04g00090 . . . . Cpe01g01851 . . . . . . . . . . . . . . . . Cone6ag0354 . . Csa05g01978 . . . . . . . . . . . Cmo04g02226 . Cma04g02132 Cma15g00901 Car04g02070 . . . . . . . . . . . . . . . . . . . Chy09g00813 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003921 0 1 0 0 0 2 2 1 2 1 2 2 2 2 3 2 2 0 2 2 2 2 1 2 2 2 1 4 1 0 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02132 Cma_Chr04 FPKM 0.646617 1.083841 1.853077 1.401776 2.490722 3.136683 2.600591 4.472044 5.073524 5.704113