Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02137 ATGGCAGGATGCAAGATTTATCTGAAGAAAAGGAAAGCAGATTGGCTTAGCTCCCTATTGCAAAGCAAATTTTTTGGTTCTTGTGTTCATCATCAAAACAATAGAAAAAATGAAAAGAATGTGTTTTGCATAGATTGTGGTATTGCCATCTGCAGGCATTGCTTGATATCTCATTGCATTCATAGGCGTTTACAGATCTGCAAGTATGTTTATCAGTACGTCGTTCGTGTTCCCGACTTGCAGAACCATCTTGATTGTTGCAATATTCAGACTTATAAGATAAATGGGGAGAAGGCTGTTCATCTGAGTCCCCGGCCACAATCGAAAGACTCGAAACCATCGACAAAATTGAAGTTTGGAGGTACTTGTGAAGCTTGTGGGAGATACATACAAGACTTGCCAAACCGGTTCTGTTCGATCGCTTGCAAAGTCTCTATGGTTTCAGTGGAACTCAACAATCAAAGCTGTAGATGCATCACATCAAAGTCGGATCCGAACGAGATTTCATGGAAGGAGAATCACAATGTAGAACCCAACACGAGCGAAATGAAATCGTCCATCTCAATGGCTGAATCAACTGAAGAGATCAAAGCATGGCAAGTGAAGTCAGGTTTGAATCCAAGGAAGCTTTTGCATAAAAGGAAGGGCATCCCACATCGATCGCCTTTAAAGTAA 675 41.19 MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCIHRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGTCEACGRYIQDLPNRFCSIACKVSMVSVELNNQSCRCITSKSDPNEISWKENHNVEPNTSEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14936388 14938711 + CmaCh04G021370.1 Cma04g02137 293218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02137 224 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 223 - -
Cma04g02137 224 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 223 - -
Cma04g02137 224 Pfam PLATZ transcription factor 68 144 IPR006734 -
Cma04g02137 224 ProSiteProfiles Zinc finger B-box type profile. 28 66 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02137 - - - csv:101210438 423.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00083 Cma04g02137 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01038 Cma-Chr4:5384907 Cma04g02137 Cma-Chr4:14936388 1.58E-22 dispersed
Cma04g02137 Cma-Chr4:14936388 Cma08g00866 Cma-Chr8:5347699 3.62E-38 dispersed
Cma04g02137 Cma-Chr4:14936388 Cma04g00083 Cma-Chr4:414220 6.77E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g526 . . . . Bpe13g01001 . . . . . . Cma04g00083 . Car04g00084 . Cpe09g00608 Cpe01g01855 . . . . . . . . . . . . . . . . . Cone9ag0379 . Csa05g01972 . . . . . . . . . Bma06g01137 . Cmo04g02230 . Cma04g02137 . Car04g02074 . . . Bhi12g00959 . . . Hepe02g2605 . Lcy10g1600 Cla01g00649 Cam01g0678 Cec01g0671 Cco01g0697 Clacu01g0666 Cmu01g0639 Cre09g1866 Lsi09g00702 Csa05g01125 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002993 1 2 0 1 1 2 3 2 2 0 2 2 2 1 2 2 2 1 3 2 2 1 2 2 2 2 2 3 3 1 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34928 PF04640 PLATZ 5.20E-24 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02137 Cma_Chr04 FPKM 4.664168 4.136242 5.059741 6.104779 1.727402 1.953422 1.686226 1.699869 1.46011 1.324375