Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02138 ATGGGACGTGAACTTTGCTTTCTTTTTCTTTTACTGCCTAGGTGTAAGAAGTACCCATCTATGGAGCTAAGGGGTTTGTTTCAGTATCTCATTAATCAGTTGAAAAAAGGTCAAGGAATTGAACTTGTTCTCCTGCAGGAACTTGTTCAACAAATGGCCAATGTCCAATACACAGAAAACCTAACTGAGGAACAGTTGGATGCTATGGCAGGAAGTGAGACACTTCGTTATCAAGCAACTTCTTTTGGGGTTACTCGAAATAACAAGGCGTTGATCAAGTCAAGCAACAGACTGCGTGACTCCTTGCTTTCTAAGGATGAACCAAAATTGGCAGTCCCTCTCTTGCTACTTATTTCTCAACACCGTTCAGTGGTTGTCATAAATGCAAATGCTCCTTATATTAAGATGGTCAGTGAACAATTTGATAGATGTCATGGAACTCTGCTTCAATACGTGGAATTTCTTAGTAGTGCAGTTACGCCTGCATCAGCTTATGCTCAGTTGATTCCCTCTCTCAATGAGCTTGCCCAGCTTTATCACCTAGATCCCGAGGTTGCTTTCCTGATATATCGACCAATAATGAGATTATTTAAGTGTCAAGGTGGTTCAGATATCTTCTGGCCACTGGATGGCAATGATGCAAATGTTGCAAGCAATAATTCTGATTCGGAATCAGCAGAATGTTCTGCAGACGTTGTTTTGGAACTTGGTTCTTCACGGAAACCTGTGAGGTGGTCAGATCTCCTCGATGCTGTAAAGTCTATGTTACCTCCAAAGGCTTGGAATAGCTTGTCTCCAGATCTCTATACTACATTTTGGGGTCTCACGCTCTATGATCTTTATGTTCCTCAGAGTAGATATGAATCTGAAATTGCTAAGCAGCATTCTGCTCTTAAAGCTTTAGAAGAGCTTTCTGATAACTCAAGTTCTGCAATCAATAAAAGGAAGAAAGACAAAGAAAGAATTCAAGAATCTCTTGATCGCTTGTCCAATGAACTAAATAAGCATGAAGAAAATGTTGCCTCCGTACGCAGGCGACTTTCTCGTGAAAAGGATAAATGGTTGAGCTCCTGCCCTGATACCTTGAAAATTAACATGGAGTTCCTTCAGCGATGTATTTTTCCCCGCTGTACATTCAGTATGCCTGATGCTGTCTATTGTGCTATGTTTGTGCACACTCTTCATTCCCTTGGAACACCATTTTTTAATACAGTCAACCATATTGATGTTTTGATATGTAAAACCTTGCAACCCATGATATGCTGCTGCACGGAATACGAAGCAGGCAGGCTTGGAAGGTTTTTATATGAGACACTAAAGATAGCTTATTATTGGAAGAGTGATGAATCCATTTATGAACGTGAATGTGGAAATATGCCTGGATTCGCCGTCTATTATAGGTATCCAAACAGTCAAAGAGTAACGTATGGCCAGTTCATCAAGGTTCATTGGAAGTGGAGTCAAAGAATTACACGATTACTCATACAATGCTTGGAATCTACAGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATTTCCAACGTTTTTCCCGTCACTAGAAAGAGCGGAATCAACCTTGAGAAAAGGGTCGCTAAGATCAAAAGTGATGAAAGAGAAGATCTGAAGGTGTTAGCAACTGGTGTTGCCGCAGCTTTGGCTGCTAGAAAGCCTTCATGGGTTACAGATGAAGAATTTGGCATGGGTTATCTTGAATTAAAGACTGCACCTTCTCTTGCATCAAAGTCTTCAGCTAGTAATTTAGTTGCCAGCCAAAGTAATTCCATTTATTCTTCCCAAAATGAACATGGTGGAGGAAAGCCTACTGCCGTCCCAAGTTCAGATTCTGGAAATATGGCCAAAGACCATTCATTGAGGTCACGAACTTCCGACATGAGGACGGATAAAATAGATGGTTTTTCTGTTCCAAAATCTGAACTAGGGCATGGGAAACTCAAAGGCACTTCATTGAACGGACCAGATTCCCAGCCACTTGTGCCCTCAACTTCTGTGCATTTAGGATCGTTAAGAGTTGTTGAAGGTCAAAAACCAGGTGATGACTTAAGTAGGACATCGAATGAAGGCTCATCAAAAGTTATTTTCAAGACCTCTTCTGAATCCGAGTTAAGAGTTTCAGCAAAACGAAACGCACCTGCTGGGATTCTTAGTAAAGCATCAAAACAAGATACCACGAAAGATGAGATTAGATCTGGAAAAGCTGCTAGCAAGAATCATGGGTCTTCCACAAGTGATCGGGAGCTTCCAATTCATGCAACAGACGGTGGTAGGCATGGAACTTCTTATAAAACTTCTTCAGTTATGCCAAATGACTATGCGCAAAGTTCATTAACTAGAGGCTTGTCCTCATCATTAAAAGCTTCAGATGGTCACGCTATTGAATTGAAGGCAGAGAGTGGAGTAGGGAGGACTTCTGATAGTAGGGCTTCGTCACTAAAGGAAAATGGTAGTGAAGCTCTTGAAGTTGGAAAATCCTCTTCTTCCAGACTTGCTCATTCTCCCAGACATGATAATTCTGCTAGTGGTTCTAGGTCTAGTGATAAACTGCCTAAAAGAGCTAGTCCTGCAGAAGAACCAGACAGACAAGGTAAACGTCGGAAAGGAGATGGTGAAAGTAGAGATGTAGATGGGGATTTTCGTAACCCTGACAAAGATAAATCCATAGACACACGATCTGTAGATGCTGATAAAATAGGAATGGATGAACAAAGTGGGTACAGAGGTTCAGATAAACCTCTGGATAGAACAAAAGATAAGGTAAATGAAAGATACGATAGGGACTACAAAGATCGGGCAGAGCGTTCTGAAAAATCCCGTGGAGATGATCCATCAGTAGAAAAAACAAGAGACAGATCAATAGAAAGATATGGAAGAGAACTCTCGGTTGATAAAGTGGAAAGAGTTTCTGATAGGTATCCTGACAAATCTAAGGATGAAAGAGATAAAGATGATAGGAGTAAGTTACGATATAATGATACAGCTACAGAAAAGTCTCATGTTGATGATCGGATCCACAGACAGAGCTTGCCTCCTCCCCCTCCCTTGCCTCCTCACATGGTCCCTCAATCTGTTAATAGTGGGAGAAGAGAAGAAGATGCAGATAGAAGGTTTGGAAATACTAGACACAGTCAAAGGCTTTCTCCTAGACACGAAGAGAAGGAACGGAGACAATCAGAGGAAAATTTAATTTCACAGGATGAAGCAAAACGCAGAAGAGAGGAGGAATTTCGAGAAAGGAAGAGAGAAGAGAGAGAGGTGGGGATTTCATTGAAGGTGGATGACAGGGAGAGGGAAAGGGAGAGGGACAAGGCAAACCTTTTGAAGGAGGACATGGATGCTGCTGCTGCCTCCAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTGGCAGAGGCTGGTGAGTATTCTCCTGTTGGCGCACCGCCATCTCTGGTTGGTGGTGGCGTATCTCAATCTTATGATGGACGAGAAAGAGGAGACAGGAAGGGTGTAATGATGCAACGTGCCAGTTACTTGGATGATCCAGGCTTGAGAATTCATGGTAAAGAAGTTGTCAACAAGATGACCAGACGTGAAGCCGATTTAATGTACGATCGGGAATGGGATGATGATAAAAGAATGAGGGCGGACCAAAAGCGGAGGCACCGGAAATAA 3681 41.95 MGRELCFLFLLLPRCKKYPSMELRGLFQYLINQLKKGQGIELVLLQELVQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVTRNNKALIKSSNRLRDSLLSKDEPKLAVPLLLLISQHRSVVVINANAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLNELAQLYHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVASNNSDSESAECSADVVLELGSSRKPVRWSDLLDAVKSMLPPKAWNSLSPDLYTTFWGLTLYDLYVPQSRYESEIAKQHSALKALEELSDNSSSAINKRKKDKERIQESLDRLSNELNKHEENVASVRRRLSREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLVASQSNSIYSSQNEHGGGKPTAVPSSDSGNMAKDHSLRSRTSDMRTDKIDGFSVPKSELGHGKLKGTSLNGPDSQPLVPSTSVHLGSLRVVEGQKPGDDLSRTSNEGSSKVIFKTSSESELRVSAKRNAPAGILSKASKQDTTKDEIRSGKAASKNHGSSTSDRELPIHATDGGRHGTSYKTSSVMPNDYAQSSLTRGLSSSLKASDGHAIELKAESGVGRTSDSRASSLKENGSEALEVGKSSSSRLAHSPRHDNSASGSRSSDKLPKRASPAEEPDRQGKRRKGDGESRDVDGDFRNPDKDKSIDTRSVDADKIGMDEQSGYRGSDKPLDRTKDKVNERYDRDYKDRAERSEKSRGDDPSVEKTRDRSIERYGRELSVDKVERVSDRYPDKSKDERDKDDRSKLRYNDTATEKSHVDDRIHRQSLPPPPPLPPHMVPQSVNSGRREEDADRRFGNTRHSQRLSPRHEEKERRQSEENLISQDEAKRRREEEFRERKREEREVGISLKVDDRERERERDKANLLKEDMDAAAASKRRKLKREHLSLAEAGEYSPVGAPPSLVGGGVSQSYDGRERGDRKGVMMQRASYLDDPGLRIHGKEVVNKMTRREADLMYDREWDDDKRMRADQKRRHRK 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14939546 14949310 - CmaCh04G021380.1 Cma04g02138 293219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02138 1226 MobiDBLite consensus disorder prediction 1204 1226 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 624 645 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 859 1015 - -
Cma04g02138 1226 Coils Coil 1074 1094 - -
Cma04g02138 1226 Coils Coil 312 353 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 599 1111 - -
Cma04g02138 1226 Pfam Transcription factor/nuclear export subunit protein 2 261 555 IPR021418 -
Cma04g02138 1226 PANTHER THO COMPLEX SUBUNIT 2 15 1133 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 1034 1111 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 689 714 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 1204 1218 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 812 857 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 659 673 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 599 623 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 1142 1172 - -
Cma04g02138 1226 MobiDBLite consensus disorder prediction 767 794 - -
Cma04g02138 1226 PANTHER THO2 PROTEIN 15 1133 IPR040007 GO:0000347|GO:0006397|GO:0006406
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02138 K12879 THOC2; THO complex subunit 2 - csv:101221461 2047.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02138 Cma15g00890 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00890 Cma-Chr15:4532496 Cma04g02138 Cma-Chr4:14939546 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02138 Cma_Chr04 FPKM 7.846789 7.718285 8.518406 9.888333 10.136478 9.713862 10.638479 9.56916 9.360139 8.193108