Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02142 ATGGGTTCGAAAATGCAGCCAAACCACAACTCTGTGGCTAAGTGGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTCAAGCTAACAGGGCTTGGCTTCGTAAGTATCTTCTGCTGTGGATTATGGGGATGGCATTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATAATAAAGTGAGAAGGAATGAAGTGTTGGGGAGCATGTGTGAACAAAGGGCAAGGATGTTGCAAGATCAGTTCAGTGTTAGTGTCAACCATGTTCATGCCTTGGCTGTGCTTGTTTCCACCTTTCATTACTTCAAGACCCCTTCTGCAATTGATCAGGAGACTTTTGCAGAATACACAGCCAGAACGGCTTTCGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAGAGAGTGGTTCATTCAGAGAGGGATATATTCGGAAAGAAACATGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCCCCAATTCGAGATGAATATGCACCAGTTATATTTTCTCAAGAAACAGTCTCTTATATTGAATTACTGGATATGATGTCGGGAGAGGAGGACCGCAAAAATATTTTGAGGTCTAGAGCAACAGGAAAAGCTGTCTTAACAAGCCCCTTAAGGCTGCTGGGCTCGCATCATCTTGGAGTTGTTTTGACGTTTCCCGTTTACAAATCCAAATTGCCATCTATACCAACTGAAGAAGAACGTATAGAAGCAACAGCAGGCTACGTTGGTGGAGCTTTTGATGTCGAGTCACTTGTCGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTAAACGTATATGATGTTACGAACTCTTCCGACCCCCTTGTCATGTACGGTCATCAATATCAAGATGGTGACAAGTTTCTTTTGCATGGGAGTAGCCTTGATTTCGGAGATCCATTCAGGAAGCATCTGATGATTTGTAGATATCAGCAGAAGGCTCCCACATCCTGGACTGCCCTGACTACTGCATTCTTATTCTTCGTTATCGGGTTATTAGTTGGATATATTTTATACGGTGCAGCAACTCACATCGTGAAGGTTGATGATGATTTTCATGAGATGCAGGAACTGGAAGTTCGAGCTGAGGCTGCTGATGTTGCAAAATCCCAGGGTCTTGCAACTGTTTCTCATGAAATTAGAACACCAATGAATGGCATTCTTGGAATGCTTGCTCTGCTTCTGGACACGGATTTAAGTTCAACTCAGAAGGATTATGCTCAGACTGCTCAAGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTTGATCGGGCAAAAATTGAAGCTGGAAGATTAGAACTGGAAGCAGTTCCATTTGACATTCGATCAATACTTGATGATGTACTGTCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTATCTGATAAAGTTCCAGAAATTGTAATTGGAGATCCAGGAAGATTCAGACAAATCATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACACATATTTGTTAAAGTACATCTAGCTGAGCACTCAAAAGGCTCCATCGACACAAAATATGTCAATGGAATGTCAGACAGTGACTTGTTTATATCGGATGGTCGTGAATTTCAAACTTTAAGTGGACGTGAGGCAGCTGATAATCAGAACTATTTGGATAACTTTAAACGTCAAATAGCTCATGAGAACTTTCAGTCGAATGCTTCTCCAAACAACCCAGCAGTAACTAATGAGTGCTGTGGCCATGTCACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTTTTACATGCCCAAAATCGAGTTTTCAAGCCCTTCATGCAAGCAGATAGCTCAACCTCTCGAAATTATGGAGGAACTGGTATCGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATGGGTGGACAGATCAACTTCGTAAGTCAGCCTCAGACTGGTAGCACGTTTTCGTTCACTGCTGTTTTAGGAAAGTTCAAGAAAAATTCAATGAATGACATGAAAAAACCCAGCTCTGAAGAGCTTCCTCCCAGTTTTAGGGGAATGAAGGCAATAATAGTTGACAGGAAACCAGTTAGAGCTTCTGTAACTAGATATCATTTGAAGAGACTTGGTATCATTGTTGAAGTCACCAGTAGCATCAACATGGCAGCTTCTTTATGCAAAGAAAATGGCTCCATAGCACCAGGAAGCACACTCCTTCCAGATATGATCTTAGTTAAAAAAGACACATTGAAGTCTGATGAGGAATGTGGTATCATTCATCAACTGAACTGGAAACTGAATGCGAGTTCGTTTAAGTTACCGAAACTGATACTTCTTGCTACAAACATCACCACTGCAGAACTAGACAAGGCAAGGGCAGCAGGTTTTGCAGACACTGTGATCATGAAGCCATTGAGGGCGAGTATGGTTGCTGCCTGTCTTCAACAAGTACTTGATGTTAAGAACCAGAGACGAGGAAGGGGCCTACCAAATGATTCTGTTTTCCTTCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAATAAAGTAAACCGAAGGGTCGCTGCAGGCGCTCTGAAGAAAGTAGGTGCAGATGTTGAGTGTGCAGAAAGCGGGAAAGCTGCACTGAAGTTGCTTGAGCTACCGCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCGGCTCGTCTCATCAGGACGATGGAGAGCAAGGCAAACGAAGGATCATCTACAACCGAAAGTGAGTGGCATGTACCAATATTAGCAATGACTGCAGACGTGATTCATGCTACCTATGACGAGTGCCTGAAATACGGAATGGATGTCTACGTCTCGAAACCCTTTGAGGAAGAAAATCTATACAAGTTGCCAAGATTTTCCAAAAATCATAGCCCATCAAAGGCTTCATGGATGCCAAATGATCATCAGCTGCACAAAACCAGAGGCAAAAGCTCCATTGCTGACCTCCTTTTGGTGGGTTCGAAAATACCAGAAACTTTTGACACCATTCCTGGTGCTAACTGTGTTCTTGCTGGTGAATCCGAGCCGAGTTTGACCCAGCGTCGGGAATTCTCGACTGGTATTGAGATTCAAGCTTAG 3168 42.87 MGSKMQPNHNSVAKWNEQMGTTKKGYTFVQANRAWLRKYLLLWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVHSERDIFGKKHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIELLDMMSGEEDRKNILRSRATGKAVLTSPLRLLGSHHLGVVLTFPVYKSKLPSIPTEEERIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDKFLLHGSSLDFGDPFRKHLMICRYQQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVDDDFHEMQELEVRAEAADVAKSQGLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGRLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDTKYVNGMSDSDLFISDGREFQTLSGREAADNQNYLDNFKRQIAHENFQSNASPNNPAVTNECCGHVTLMVSVEDTGIGILLHAQNRVFKPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSQPQTGSTFSFTAVLGKFKKNSMNDMKKPSSEELPPSFRGMKAIIVDRKPVRASVTRYHLKRLGIIVEVTSSINMAASLCKENGSIAPGSTLLPDMILVKKDTLKSDEECGIIHQLNWKLNASSFKLPKLILLATNITTAELDKARAAGFADTVIMKPLRASMVAACLQQVLDVKNQRRGRGLPNDSVFLQSLLCGKRILIVDDNKVNRRVAAGALKKVGADVECAESGKAALKLLELPHNFDACFMDIQMPEMDGFEAARLIRTMESKANEGSSTTESEWHVPILAMTADVIHATYDECLKYGMDVYVSKPFEEENLYKLPRFSKNHSPSKASWMPNDHQLHKTRGKSSIADLLLVGSKIPETFDTIPGANCVLAGESEPSLTQRREFSTGIEIQA 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14984183 14992051 - CmaCh04G021420.1 Cma04g02142 293223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02142 1055 CDD HisKA 380 441 IPR003661 GO:0000155|GO:0007165
Cma04g02142 1055 ProSiteProfiles Response regulatory domain profile. 700 830 IPR001789 GO:0000160
Cma04g02142 1055 Pfam His Kinase A (phospho-acceptor) domain 381 445 IPR003661 GO:0000155|GO:0007165
Cma04g02142 1055 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310|GO:0016772
Cma04g02142 1055 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310|GO:0016772
Cma04g02142 1055 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310|GO:0016772
Cma04g02142 1055 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310|GO:0016772
Cma04g02142 1055 CDD HATPase_EvgS-ArcB-TorS-like 497 673 - -
Cma04g02142 1055 Gene3D - 58 110 - -
Cma04g02142 1055 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 670 IPR036890 -
Cma04g02142 1055 SUPERFAMILY CheY-like 695 832 IPR011006 -
Cma04g02142 1055 Pfam Response regulator receiver domain 857 978 IPR001789 GO:0000160
Cma04g02142 1055 Gene3D - 353 443 - -
Cma04g02142 1055 SMART REC_2 855 980 IPR001789 GO:0000160
Cma04g02142 1055 ProSiteProfiles Histidine kinase domain profile. 387 675 IPR005467 -
Cma04g02142 1055 ProSiteProfiles Response regulatory domain profile. 856 984 IPR001789 GO:0000160
Cma04g02142 1055 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Cma04g02142 1055 Gene3D CHASE domain 111 326 IPR042240 -
Cma04g02142 1055 PANTHER HISTIDINE KINASE 4 21 978 - -
Cma04g02142 1055 Coils Coil 430 450 - -
Cma04g02142 1055 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 366 446 IPR036097 GO:0000155|GO:0007165
Cma04g02142 1055 SMART HisKA_10 380 445 IPR003661 GO:0000155|GO:0007165
Cma04g02142 1055 Gene3D - 444 676 IPR036890 -
Cma04g02142 1055 Pfam CHASE domain 110 290 IPR006189 -
Cma04g02142 1055 SMART CHASE_2 107 292 IPR006189 -
Cma04g02142 1055 Gene3D - 848 985 - -
Cma04g02142 1055 SUPERFAMILY CheY-like 854 978 IPR011006 -
Cma04g02142 1055 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 978 - -
Cma04g02142 1055 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 492 673 IPR003594 -
Cma04g02142 1055 CDD REC_hyHK_CKI1_RcsC-like 857 979 - -
Cma04g02142 1055 SMART HKATPase_4 492 675 IPR003594 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02142 Cma15g00887 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01683 Cma-Chr1:11482122 Cma04g02142 Cma-Chr4:14984183 1.18E-53 dispersed
Cma04g00016 Cma-Chr4:74939 Cma04g02142 Cma-Chr4:14984183 0 dispersed
Cma04g02142 Cma-Chr4:14984183 Cma17g01443 Cma-Chr17:9486488 0 dispersed
Cma15g00888 Cma-Chr15:4523231 Cma04g02142 Cma-Chr4:14984183 2.59E-07 transposed
Cma15g00887 Cma-Chr15:4518099 Cma04g02142 Cma-Chr4:14984183 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34929 PF02518 HATPase_c 1.10E-30 CL0025 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02142 K14489 - csv:101209777 1717.98