Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02146 ATGTTCGAGGGAAAGGATCTCGCTTCCGATGGTGAGAACTCTCGGACCAAGCTTTGGCGCCATGTTCCTGAGCGTACGAGGCCGAATTCTAATGCGAAATCTGGTTTCTCGGACAAGGGTTTTAGTTTTCGGGAAGAATCGGTGATGGGTTCTGATGGGTTGCATTCGAAATCTCCGAGAATCGGGAATTCGGCCTCTCAAGAACTCACTCTTAGCTACCTTTGTGAGAATTCGAAAGAGAAGGGCTATGCGGCTTCCTTCGAGAAAGGTAGTTACAAAGGTAAGGAAGTTTTGTTTTCTGAGAATTGTAACGAAAATGATAAATGGGTTGAGAGGGATTTCCTGAATTTGAACTCGATTAGGGGAAATCAATCGAAGCGGGAGATTGAGGAGGAGATTGAAAGGGAGAATCGGGGAAAGAAACCCAAGCTTGAAACGCTTAATCTTTCTTTAGCTTTGCCTGAAGTTTCCCTCTCTCTCACTGCTTCAAATGCTTTGCACAATGAAGATCCTCCCCCTGTCCGGTCTAAGCCCTGTAGGAGCGTTCAATCTTTGGCTCCTTCCATGAACAACACCCAAACTACTTGTTCTAACGATTTTACTGCTGCTTCGCTTTCCTATTCCTACTCCCACCAATTTTCTCACAACCCCAGTTGCTCCTTGACTCGAAATTCGACTGAGAATTACGAGTATTCGGTTGGGAGAGACGACCATATTTGGAACTGTGGAGAGGGAACTAATGGTTCGGTTCATAGCAGGTTCAAACCATTAGGGGATGGAGTTGCCTTATCAAATCATGGAAGTGGGCTGAATTCCTTGTTGCAGGGGAATCGGCCTTCGAATAAGGAGGTTTGTAACAACTCCGATGAACACTCATTTTTCCCGTCTGAACTACCAGCGAGACCGAAAATGGAGGCAAAGTTGGGGAATTCGATTGGAAGGGGATCAGAAAACTTGAAAGGGGTAGAGGGTATTACTAGGCTGGAGAGAATCATTCGTGAAATCGTCTCGGAGTCTATCTTGGTCATGGCTCAGATGGTTCAAGAGCTTCCTGATGAAACACTTGCATCAATCAAAGATTATTTGAAAGATCTGATTGCTAAGCCTGACAAGAGAGAAGAATTATCGTCCCTCCAAAAGCGGCTGGAGCGACGATCCGATCTGACCAAGGAAACTCTTTCGAAGTGTCACAAAGCACAGCTTGAAATTCTAGTTGCAGTGAAGATGGGGCTTGCTAGTTTCATCTCTGCAAAAAGCAGGTGCTCCATTTCTGAGCTTGTGGACATTTTCTTGTTTCTGAAATGCAGGAACTGCAAGAATGTAATCCCAGTTGATGATTGTGACTGCAAAATCTGCTCAGCCAACAAGGGGTTTTGCAGCTCATGTATGTGCCCCATTTGTTTGAACTTTGATTGTGCAAACAATACATGTAGCTGGGTTGGTTGTGACGTCTGCTCCCATTGGTGCCATGCTTCCTGTGGGATTGAGAAGAATCTCATCCGACCTGGTCCAAGCCTCAAAGGACCGTCGGGGACAACAGAGATGCAGTTCCACTGCATTGCTTGTAATCATGCTTCAGAGATGTTTGGATTTGTGAAGGATGTTTTTGTGTACTGTGCTAAGAACTGGGGTCTAGAAACCTTGATGAAGGAGCTTGAATGTGTGAAAAGGATCTTTATTGGAAGTGATGATTACAAAGGCAAGGATTTGTATATTAAAGCTGCTCGGATTCTGGCCAAGCTCGAATCCAAAGCACTTGCTCCTTGGGAGGCCTGCAATATCATTCTTGAATACTTTAATCATGGCACATCAGAGATTTCAACTTCAGGGGTATTCTCCGAGAAGTTGGGAACAACCGACACGGCCAGCCTGTCAAAAGAGGGGATGTCGCTCCCTCAGTCGGGTTCCCTACCTTCATCATACGTGATGCAGAAAAACACCCCATCTAGGCCACATCATGACTTGATTACCAGTGATCTTCGACGGAACAATCTCAAAGCCTCCATTGGCAGCGACTTGAATGCAGTCGATGAGTTTCGATTTGGGACGTATACAAAGAAAGATGGCCTGGAGAGCTTGGAAAGCATTATAAGAATCAAGAAAGCCGAGGCAGGGATGTTCCAAAACAAGGCAGACGAGGCACGGAGGGAGGCTGAAAGACTAAGACAGATAATCATTGCGAAGACGGAGAAGCTCGACGAGGAGTACGCGGAGAAGATCGGGAAGCTGTGCTTGAAAGAGGTGGAGAATAGGCGGAGGAAGAAGGCAGAGGAGCTGAAGGCGCTGGAGAACTCTCAAATCGATTACTACAACATGAAGATGAGAATGCAGAAGGAGATAGGTGGACTGCTGGAGAGGATGGAAATGACAAAAAAGCAAATAGTGTGA 2388 45.94 MFEGKDLASDGENSRTKLWRHVPERTRPNSNAKSGFSDKGFSFREESVMGSDGLHSKSPRIGNSASQELTLSYLCENSKEKGYAASFEKGSYKGKEVLFSENCNENDKWVERDFLNLNSIRGNQSKREIEEEIERENRGKKPKLETLNLSLALPEVSLSLTASNALHNEDPPPVRSKPCRSVQSLAPSMNNTQTTCSNDFTAASLSYSYSHQFSHNPSCSLTRNSTENYEYSVGRDDHIWNCGEGTNGSVHSRFKPLGDGVALSNHGSGLNSLLQGNRPSNKEVCNNSDEHSFFPSELPARPKMEAKLGNSIGRGSENLKGVEGITRLERIIREIVSESILVMAQMVQELPDETLASIKDYLKDLIAKPDKREELSSLQKRLERRSDLTKETLSKCHKAQLEILVAVKMGLASFISAKSRCSISELVDIFLFLKCRNCKNVIPVDDCDCKICSANKGFCSSCMCPICLNFDCANNTCSWVGCDVCSHWCHASCGIEKNLIRPGPSLKGPSGTTEMQFHCIACNHASEMFGFVKDVFVYCAKNWGLETLMKELECVKRIFIGSDDYKGKDLYIKAARILAKLESKALAPWEACNIILEYFNHGTSEISTSGVFSEKLGTTDTASLSKEGMSLPQSGSLPSSYVMQKNTPSRPHHDLITSDLRRNNLKASIGSDLNAVDEFRFGTYTKKDGLESLESIIRIKKAEAGMFQNKADEARREAERLRQIIIAKTEKLDEEYAEKIGKLCLKEVENRRRKKAEELKALENSQIDYYNMKMRMQKEIGGLLERMEMTKKQIV 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15007461 15012126 + CmaCh04G021460.1 Cma04g02146 293227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02146 795 Coils Coil 704 731 - -
Cma04g02146 795 CDD PHD_OBE1_like 463 522 - -
Cma04g02146 795 Coils Coil 745 765 - -
Cma04g02146 795 Pfam Coiled-coil region of Oberon 664 784 IPR032535 -
Cma04g02146 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 346 368 IPR004082 -
Cma04g02146 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 385 400 IPR004082 -
Cma04g02146 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 400 415 IPR004082 -
Cma04g02146 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 426 447 IPR004082 -
Cma04g02146 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 470 490 IPR004082 -
Cma04g02146 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 543 562 IPR004082 -
Cma04g02146 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 691 711 IPR004082 -
Cma04g02146 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 730 752 IPR004082 -
Cma04g02146 795 Pfam PHD - plant homeodomain finger protein 436 557 IPR032881 -
Cma04g02146 795 MobiDBLite consensus disorder prediction 1 27 - -
Cma04g02146 795 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 794 IPR004082 -
Cma04g02146 795 MobiDBLite consensus disorder prediction 1 39 - -
Cma04g02146 795 PANTHER PROTEIN OBERON 3 1 794 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02146 - - - csv:101209125 1352.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02146 Cma15g00885 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02146 Cma-Chr4:15007461 Cma08g00516 Cma-Chr8:2969308 3.52E-131 dispersed
Cma15g00885 Cma-Chr15:4506333 Cma04g02146 Cma-Chr4:15007461 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00963 . . . . . . . Cmo04g02238 Cmo15g00924 Cma04g02146 Cma15g00885 Car04g02079 Car15g00832 Cpe13g00430 . Bhi12g00970 . . . . . Lcy10g1592 Cla01g00657 Cam01g0687 Cec01g0679 Cco01g0707 Clacu01g0676 Cmu01g0650 Cre09g1857 Lsi09g00710 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02146 Cma_Chr04 FPKM 24.332214 27.396196 14.873587 14.736854 16.303532 14.796363 17.240465 12.624611 11.900928 11.286191