Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02147 ATGGACACTGTGGACAGGCCAGGTTTCAGGCATACTGCCTCTGCCATTGCAGTCCTTGCACATATTTTTGGTCTCACTGCCTGCATTCTTACGCTCGTTTGGCTGCTGCATTATCGAGGCGGCCTCGCCTACGATTCTCGGAGCGCCGAACTCGTTTTCAATTGCCACCCGTTCTTCATGCTCCTCGGTTTCGTGTTCGTGTCGGGGGAAGCAATGATGGCTTACAAGACAGTGAGGGCAGACAAAATGACAAGGAAGATAGTTCACATGGCGTTGCATTTTGTAGCCATTTGTATGGGAATTGCAGGCATAAACGCTTCTTTCAAGTTCCATGATATGATCAAATTGGAGCATGTGTTTAGTTTGCATTCATGGATTGGCATTGTCACTTTCTGCCTCTATGGCTTACAGTGGCTGTTGGGTCTGTGCACGTTTTTGTTTCCAGGAGCAAGCAGAGAGACCAAAGCCAGGCTGCTTCCATGGCACATAAGTGGGGGAAGGGCTCTGCTGCTGATGATTATCTGCACAGCCTTGACTGGTTTGTCTCAGAAGGCTACTTCTTCGACACTCACTGGCAACCATGAGTCTCGTTTGCTTAACTTCACTGGTTTCTTCGTCCTCCTCTTCGGCATTTCCATTGATATCGCCATCGGTTTTGATCGGTTTCGCCACGCCGATCTCACGACTTAA 690 48.99 MDTVDRPGFRHTASAIAVLAHIFGLTACILTLVWLLHYRGGLAYDSRSAELVFNCHPFFMLLGFVFVSGEAMMAYKTVRADKMTRKIVHMALHFVAICMGIAGINASFKFHDMIKLEHVFSLHSWIGIVTFCLYGLQWLLGLCTFLFPGASRETKARLLPWHISGGRALLLMIICTALTGLSQKATSSTLTGNHESRLLNFTGFFVLLFGISIDIAIGFDRFRHADLTT 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15012724 15013927 - CmaCh04G021470.1 Cma04g02147 293228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02147 229 Pfam Eukaryotic cytochrome b561 56 186 IPR006593 -
Cma04g02147 229 Gene3D - 10 223 - -
Cma04g02147 229 CDD Cyt_b561_ACYB-1_like 46 186 - -
Cma04g02147 229 ProSiteProfiles Cytochrome b561 domain profile. 19 218 IPR006593 -
Cma04g02147 229 PANTHER CYTOCHROME B561-RELATED 4 220 IPR043205 GO:0016491
Cma04g02147 229 SMART 561_7 55 181 IPR006593 -
Cma04g02147 229 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cma04g02147 229 PANTHER TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 3-RELATED 4 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02147 K08360 CYB561; transmembrane ascorbate-dependent reductase [EC:7.2.1.3] - csv:101208884 386.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02147 Cma-Chr4:15012724 Cma04g02842 Cma-Chr4:18985478 3.29E-53 dispersed
Cma04g00038 Cma-Chr4:212345 Cma04g02147 Cma-Chr4:15012724 3.88E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g539 . . . Bda11g00198 . . . . . . . . . . . . Cpe01g01859 . . . . . . . . . . . . . . Cone13ag0724 . Cone6ag0339 Cone9ag0373 . Csa05g01961 . . . . . Bda11g00198 . . . . . Cmo04g02239 . Cma04g02147 . Car04g02080 . . . Bhi12g00971 . . . . . Lcy10g1591 Cla01g00658 Cam01g0688 Cec01g0680 Cco01g0708 Clacu01g0677 Cmu01g0651 Cre09g1856 Lsi09g00711 . . Cme09g01298
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012715 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02147 Cma_Chr04 FPKM 2.654858 3.110301 2.44035 1.646895 1.934008 1.358034 1.335033 0.0 0.0 0.0