Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02152 ATGTTGAAACTTTCTTCTTCTTCTGCAGCTGCTACAGCTTCTTCTTCTGGTGGTTCTCCACCTCCTCCACCCAATTCTGACCATGGGGTCACCAGTAAAAGAAAGAGAAGACCAGCAGGAACCCCAGATCCAGATGCTGAAGTGGTTTCGTTATCGCCAAAAACCCTTTTGGAATCGGATCGGTATGTTTGTGAAATATGCAACCAAGGGTTCCAAAGGGATCAGAATCTTCAAATGCACCGCCGCCGCCACAAGGTGCCGTGGAAGCTGCTCAAGAGAGCGGAGACGGCGGAGGCAGTCAAGAAAAAGGTGTTCGTTTGTCCTGAACCCACTTGTCTCCACCATGACCCTCGCCATGCCCTTGGTGACCTCGTCGGTATCAAAAAACACTTCCGGAGAAAGCATAGCAATCAGAAGCATTGGGTTTGTGACAAATGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCATCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGCCGTGTCTTTTCTAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCTGATGCACCGCCGCTGTTGCTACCACCGCCATTATTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAACGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCATCTTTCATCTCCAAGCTCGGCGTTTCTAAAACTCTCAATTGGGTCAAACAAGGAAGCAAAGGATGAACGTCAGCTCGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCAAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAGGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACCATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACGCCTGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA 1158 47.93 MLKLSSSSAAATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPRHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRQLRSDAPPLLLPPPLLQPYSRSISYTGASTSNDHSFQTATPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKDERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15062482 15064603 + CmaCh04G021520.1 Cma04g02152 293233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02152 385 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 278 385 - -
Cma04g02152 385 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 5 269 - -
Cma04g02152 385 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cma04g02152 385 MobiDBLite consensus disorder prediction 1 52 - -
Cma04g02152 385 Coils Coil 286 341 - -
Cma04g02152 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cma04g02152 385 MobiDBLite consensus disorder prediction 1 16 - -
Cma04g02152 385 Gene3D Classic Zinc Finger 126 198 - -
Cma04g02152 385 Gene3D Classic Zinc Finger 40 108 - -
Cma04g02152 385 SUPERFAMILY beta-beta-alpha zinc fingers 61 161 IPR036236 -
Cma04g02152 385 SMART c2h2final6 105 135 IPR013087 -
Cma04g02152 385 SMART c2h2final6 62 84 IPR013087 -
Cma04g02152 385 SMART c2h2final6 141 168 IPR013087 -
Cma04g02152 385 PANTHER OS03G0310200 PROTEIN 278 385 IPR039288 GO:0009630
Cma04g02152 385 PANTHER OS03G0310200 PROTEIN 5 269 IPR039288 GO:0009630
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02152 Cma15g00878 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02152 Cma-Chr4:15062482 Cma13g01152 Cma-Chr13:8463470 4.47E-141 dispersed
Cma10g00061 Cma-Chr10:227129 Cma04g02152 Cma-Chr4:15062482 2.63E-18 dispersed
Cma15g00878 Cma-Chr15:4451639 Cma04g02152 Cma-Chr4:15062482 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34932 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02152 K25871 - csv:101210468 625.165