Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02152 | ATGTTGAAACTTTCTTCTTCTTCTGCAGCTGCTACAGCTTCTTCTTCTGGTGGTTCTCCACCTCCTCCACCCAATTCTGACCATGGGGTCACCAGTAAAAGAAAGAGAAGACCAGCAGGAACCCCAGATCCAGATGCTGAAGTGGTTTCGTTATCGCCAAAAACCCTTTTGGAATCGGATCGGTATGTTTGTGAAATATGCAACCAAGGGTTCCAAAGGGATCAGAATCTTCAAATGCACCGCCGCCGCCACAAGGTGCCGTGGAAGCTGCTCAAGAGAGCGGAGACGGCGGAGGCAGTCAAGAAAAAGGTGTTCGTTTGTCCTGAACCCACTTGTCTCCACCATGACCCTCGCCATGCCCTTGGTGACCTCGTCGGTATCAAAAAACACTTCCGGAGAAAGCATAGCAATCAGAAGCATTGGGTTTGTGACAAATGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCATCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGCCGTGTCTTTTCTAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCTGATGCACCGCCGCTGTTGCTACCACCGCCATTATTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAACGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCATCTTTCATCTCCAAGCTCGGCGTTTCTAAAACTCTCAATTGGGTCAAACAAGGAAGCAAAGGATGAACGTCAGCTCGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCAAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAGGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACCATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACGCCTGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA | 1158 | 47.93 | MLKLSSSSAAATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPRHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRQLRSDAPPLLLPPPLLQPYSRSISYTGASTSNDHSFQTATPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKDERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 15062482 | 15064603 | + | CmaCh04G021520.1 | Cma04g02152 | 293233 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02152 | 385 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 278 | 385 | - | - | |
Cma04g02152 | 385 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 5 | 269 | - | - | |
Cma04g02152 | 385 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 64 | 84 | IPR013087 | - | |
Cma04g02152 | 385 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Cma04g02152 | 385 | Coils | Coil | 286 | 341 | - | - | |
Cma04g02152 | 385 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 62 | 84 | IPR013087 | - | |
Cma04g02152 | 385 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Cma04g02152 | 385 | Gene3D | Classic Zinc Finger | 126 | 198 | - | - | |
Cma04g02152 | 385 | Gene3D | Classic Zinc Finger | 40 | 108 | - | - | |
Cma04g02152 | 385 | SUPERFAMILY | beta-beta-alpha zinc fingers | 61 | 161 | IPR036236 | - | |
Cma04g02152 | 385 | SMART | c2h2final6 | 105 | 135 | IPR013087 | - | |
Cma04g02152 | 385 | SMART | c2h2final6 | 62 | 84 | IPR013087 | - | |
Cma04g02152 | 385 | SMART | c2h2final6 | 141 | 168 | IPR013087 | - | |
Cma04g02152 | 385 | PANTHER | OS03G0310200 PROTEIN | 278 | 385 | IPR039288 | GO:0009630 | |
Cma04g02152 | 385 | PANTHER | OS03G0310200 PROTEIN | 5 | 269 | IPR039288 | GO:0009630 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02152 | Cma15g00878 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02152 | Cma-Chr4:15062482 | Cma13g01152 | Cma-Chr13:8463470 | 4.47E-141 | dispersed | |
Cma10g00061 | Cma-Chr10:227129 | Cma04g02152 | Cma-Chr4:15062482 | 2.63E-18 | dispersed | |
Cma15g00878 | Cma-Chr15:4451639 | Cma04g02152 | Cma-Chr4:15062482 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34932 | None | None | None | None | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02152 | K25871 | - | csv:101210468 | 625.165 |