Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02153 ATGGAAAGAATCCTCTCTACTTTGGCAATGATTTTTATCTTATTTGCTTTGGCTTCTTCAGCTGAACAAGAGGCTGTGAGTTCAATAAAAACTGATGCCGCAGCTCTTCTTAAGTTCAAGGACATGATTGACAAGGACCCAAATGGAGTGTTGTCCAGTTGGAAGCTTGAGAACAATCCATGTTCATGGTATGGAGTTTCATGCCAATCCGGAAGAGCAATTGCTCTTGATCTGAGTGGTTGTAATCTTGCAGGGAATGTTCATTTTGATCCTCTGTCTTCTTTGGATATGTTGTTGGCTTTGAATTTGTCTACAAATTCTTTCATTATAAACTCAACTACTTTGCTTCATCTTCCTTATAATTTGCAGCAACTTGAGCTCTCTCTTGCCAAAGTTGTAGGTAGTGTGCCAGAGAATCTTTTCTCTAAGTGTCCAAATCTTATGTTTGTAGACCTTTCATTCAACAATCTTACAAGCTATCTGCCTGAAAATCTTCTGTTTAATGCTAATAAGCTTCAAGATCTTGATCTCTCCTACAACAATCTAACTGGGTCGATCTCAGGATTAAGAATATATGAGAATTCTTGCAGCTCTTTGTTGCGCATTGAGCTTTCGGGGAATCAAATTGTCGGTTCGATACCGAGTGGTATTTCGAACTGCTCGAATCTGCAAACGCTTGGTATGTCAAACAATTTTCTCAGTGGGGATATCCCCAGATCTTTAGGGGAAATCAGCAGTTTACAGAGGGTGGATCTATCTCACAATCAGCTCACTGGTTGGCTTCCTTCTGATTGGAGAAATGCCTGCAATTCACTTCAAGAACTAAGGCTTAGCTACAACAACATTTCTGGTGCAATTCCAGCTTCCTTCTCTGCTTGTTCTTGGCTGCAAATTTTGGATCTTTCAAATAACAATCTATCTGGTCCTTTACCGGATTCCATCTTCAAGAATCTTGTCTCTTTACAAAGCTTGCTATTGAGTAATAACATTATCTCTGGACCATTGCCTTCATCCATATCTCATTGCAAGAATCTGCAGCTTGTAGACTTAAGTTCCAATAGAATTTCTGGATTGATCTCACCAGATATATGTCCAGGTGCTGAGTCACTTCAGGAACTGAAAATTCCAGACAATCTCATCATAGGAGGAATCCCACCTGAGCTCTCACTGTGTCCACAGCTAAAGACAATTGATTTTAGTTTAAACTATCTGAAAGGCTCCATACCAGCAGAGCTTGGAAAGCTTCAGAATCTTGAACAGCTGATAGCATGGTTCAATGGTTTAGAAGGGAACATACCTTCAGAATTGGGGAAATGTAGAAACTTGAAGGATCTTATACTTAATAACAATCATTTAAGTGGTGAAATCCCCACTGAATTGTTCAGTTGCAGCAATCTTGAATGGATTTCACTCACGAGTAATGAATTAACTGGAGAGATCCCAAAAGAATTTGGTCTTTTGCCAAGGCTGGCTGTCCTGCAACTTGGAAACAATAGTTTAAGTGGTCAGATACCAGCGGAGTTGGCAAACTGCAGCACTTTGGTTTGGTTGGATTTGAACAGCAATAAGCTTACAGGGGAAATACCACCTAGACTTGGCAGGCAGCTTGGAGCCAAATCATTGAATGGGATTCTTTCTGGAAACACTCTAGTGTTTGTTCGAAACGTCGGGAATTCGTGTAAAGGAGTCGGGGGCTTGTTAGAGTTTTCTGGAATCAGACCTGAAAGACTACAGCAGGAACCAACATTGAAGACTTGTGATTTCACTAGATTGTACTCTGGTCCAGTCCTCAGTTTGTTTACAAAGTACCAAACTTTGGAGTACTTGGATCTTTCTTACAATGAGCTTCGTGGGAGAATACCAGAAGAGTTCGGAGATATGGTTGCCTTACAGGTTCTAGAATTATCACACAACCAACTTTCTGGAGAGATTCCAGTATCGTTCGGTCGCCTAAAGAACTTGGGAGTGTTTGATGCATCACATAACAGACTGCAGGGTCATATTCCAGATTCATTTTCAAACTTATCATTCTTAGTGCAAATTGATCTATCTTATAATGAACTAACAGGGCGAATTCCATCAAGGGGGCAGCTCAGCACACTACCTGCAAGTCAGTATGCAAACAATCCAGGACTCTGTGGAGTTCCTTTGCCTGAATGCCAGAGTGAAGACCAGCCGGCGACAGGTCCTAATGTAGATGCTGGAAAAGGAAGAACAAAGCCAGAATCAGTGTCATCGGTTAATAGTATTGTTTTAGGTGTTCTTATTTCCCTTGCCTGTGTGTGCATTTTGATTGTATGGGCTATTGCCATGCGTGCAAGACGAAAAGAAGAAGAGGAAGTGAAGATGCTTAATAGTTTACAAGCAATACATGCCCCTACTACTTGGAAAATTGACAAAGAGAAAGAGCCACTGAGTATCAATGTGGCAACTTTCCAAAGACAGCTAAGAAAGCTCAAGTTCTCCCAACTGATAGAAGCAACTAATGGCTTCTCAGCCGAAAGTCTCATTGGTAGTGGCGGGTTCGGTGAAGTGTTTAAAGCAACACTAAAGGATGGATCGAGTGTTGCAATCAAGAAACTGATACGTCTTAGTTGCCAGGGAGACCGTGAATTCATGGCGGAGATGGAAACCTTAGGAAAGATCAAACATGGAAATCTAGTACCTCTTCTGGGATACTGTAAAATAGGTGAGGAGAGGCTGCTAGTGTATGAGTTCATGAAGTTCGGTAGCCTAGAAGAGATGCTTCATGGAAGAGCAAAGATGCAAGATAGCAGAATTCTAACATGGGATGAAAGGAAAAAGATAGCCAGAGGTGCTGCAAAAGGACTCTGTTTCCTACACCATAACTGCATTCCACACATAATTCACAGAGACATGAAGTCCAGCAATGTACTTCTGGACCATGATTTAGAAGCAAGAGTTTCAGATTTTGGAATGGCAAGGCTGATAAGTGCTCTTGACACCCATCTGAGTGTAAGCACACTTGCAGGCACTCCTGGTTATGTCCCTCCTGAGTACTACCAAAGCTTCAGGTGCACAGCAAAAGGCGACGTCTATTCGTTCGGTGTCGTCCTCTTAGAACTCTTGACAGGGAAACGACCAACTGATAAGGAGGATTTTGGGGACACCAATTTGGTGGGTTGGGTCAAAATGAAAGTCAATGATGGAAAACAAATGGAAGTGATAGATCCAGAGTTGCTTTCAGTGACCAAAACAAGTGACGAATCAGAAGCAGAAGAAGTTAAAGAAATGGTAAGATATTTGGAGATAACCCTTCGGTGTGTTGAAGAGTTTCCTTCCAAAAGGCCTAACATGTTGCAGGTGGTAGCCATGCTACGAGAGTTGATGCCTGGATCAGGAAGCAGCAACAGTGCTTGA 3381 41.85 MERILSTLAMIFILFALASSAEQEAVSSIKTDAAALLKFKDMIDKDPNGVLSSWKLENNPCSWYGVSCQSGRAIALDLSGCNLAGNVHFDPLSSLDMLLALNLSTNSFIINSTTLLHLPYNLQQLELSLAKVVGSVPENLFSKCPNLMFVDLSFNNLTSYLPENLLFNANKLQDLDLSYNNLTGSISGLRIYENSCSSLLRIELSGNQIVGSIPSGISNCSNLQTLGMSNNFLSGDIPRSLGEISSLQRVDLSHNQLTGWLPSDWRNACNSLQELRLSYNNISGAIPASFSACSWLQILDLSNNNLSGPLPDSIFKNLVSLQSLLLSNNIISGPLPSSISHCKNLQLVDLSSNRISGLISPDICPGAESLQELKIPDNLIIGGIPPELSLCPQLKTIDFSLNYLKGSIPAELGKLQNLEQLIAWFNGLEGNIPSELGKCRNLKDLILNNNHLSGEIPTELFSCSNLEWISLTSNELTGEIPKEFGLLPRLAVLQLGNNSLSGQIPAELANCSTLVWLDLNSNKLTGEIPPRLGRQLGAKSLNGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLQQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPEEFGDMVALQVLELSHNQLSGEIPVSFGRLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGRIPSRGQLSTLPASQYANNPGLCGVPLPECQSEDQPATGPNVDAGKGRTKPESVSSVNSIVLGVLISLACVCILIVWAIAMRARRKEEEEVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMKFGSLEEMLHGRAKMQDSRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVNDGKQMEVIDPELLSVTKTSDESEAEEVKEMVRYLEITLRCVEEFPSKRPNMLQVVAMLRELMPGSGSSNSA 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15068257 15071637 - CmaCh04G021530.1 Cma04g02153 293234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02153 1126 ProSiteProfiles Protein kinase domain profile. 831 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02153 1126 ProSitePatterns Protein kinases ATP-binding region signature. 837 860 IPR017441 GO:0005524
Cma04g02153 1126 SUPERFAMILY Protein kinase-like (PK-like) 812 1113 IPR011009 -
Cma04g02153 1126 SMART serkin_6 831 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02153 1126 Pfam Brassinosteroid receptor island domain 542 600 IPR045381 -
Cma04g02153 1126 Gene3D Ribonuclease Inhibitor 31 141 IPR032675 -
Cma04g02153 1126 Gene3D Phosphorylase Kinase; domain 1 792 906 - -
Cma04g02153 1126 SMART LRR_typ_2 439 463 IPR003591 -
Cma04g02153 1126 SMART LRR_typ_2 318 342 IPR003591 -
Cma04g02153 1126 SMART LRR_typ_2 487 511 IPR003591 -
Cma04g02153 1126 SMART LRR_typ_2 144 168 IPR003591 -
Cma04g02153 1126 SMART LRR_typ_2 244 267 IPR003591 -
Cma04g02153 1126 SMART LRR_typ_2 627 651 IPR003591 -
Cma04g02153 1126 SMART LRR_typ_2 296 317 IPR003591 -
Cma04g02153 1126 SMART LRR_typ_2 269 292 IPR003591 -
Cma04g02153 1126 SUPERFAMILY RNI-like 202 531 - -
Cma04g02153 1126 Pfam Leucine rich repeat 271 329 IPR001611 GO:0005515
Cma04g02153 1126 Pfam Leucine rich repeat 599 640 IPR001611 GO:0005515
Cma04g02153 1126 Pfam Leucine rich repeat 440 500 IPR001611 GO:0005515
Cma04g02153 1126 PRINTS Leucine-rich repeat signature 172 185 - -
Cma04g02153 1126 PRINTS Leucine-rich repeat signature 244 257 - -
Cma04g02153 1126 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 17 1116 - -
Cma04g02153 1126 Pfam BspA type Leucine rich repeat region (6 copies) 127 232 IPR026906 -
Cma04g02153 1126 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 17 1116 - -
Cma04g02153 1126 Gene3D - 545 601 - -
Cma04g02153 1126 CDD STKc_IRAK 837 1116 - -
Cma04g02153 1126 Gene3D Ribonuclease Inhibitor 169 720 IPR032675 -
Cma04g02153 1126 SUPERFAMILY L domain-like 583 716 - -
Cma04g02153 1126 SUPERFAMILY L domain-like 56 267 - -
Cma04g02153 1126 ProSiteProfiles Leucine-rich repeat profile. 171 193 IPR001611 GO:0005515
Cma04g02153 1126 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Cma04g02153 1126 MobiDBLite consensus disorder prediction 718 740 - -
Cma04g02153 1126 Gene3D Transferase(Phosphotransferase) domain 1 907 1123 - -
Cma04g02153 1126 Pfam Protein kinase domain 833 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02153 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 955 967 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02153 Cma15g00877 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01053 Cma-Chr3:7263570 Cma04g02153 Cma-Chr4:15068257 0 dispersed
Cma04g02153 Cma-Chr4:15068257 Cma07g00767 Cma-Chr7:3443007 5.05E-38 dispersed
Cma10g00211 Cma-Chr10:950082 Cma04g02153 Cma-Chr4:15068257 6.65E-154 transposed
Cma15g00877 Cma-Chr15:4444583 Cma04g02153 Cma-Chr4:15068257 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68526 PF00069 Pkinase 1.40E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02153 - - csv:101208987 2055.41