Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02154 ATGGCGGAAGTAGAATTGTTGGAAATGTTTACAAACCGAGAGCTGGAAGAAGGAGCCATTGGTTCGTCTGATTGGAATCCAACTGATGCTGTGCTGTTCGTTGGACTGAGTTTGGTGCTTGGAATCGCTTGCAGACACTTACTGCGAGGCACCAGAGTTCCTTATACAGTTGCCTTGCTTGTTCTTGGCATAATTCTTGGATCCATTGAATATGGCACACACCATCGATTGGGAAAGATAGGGGATGGCATCCGTCTATGGGGAACAATTGATCCTGATCTATTATTGGCTGTTTTCCTTCCTGCTCTGCTGTTTGAGAGTTCCTTTTCAATGGAAGTGCACCAAATAAAGAGGTGTCTGGCCCAAATGATCTTATTAGCTGGTCCAGGTGTTTTAATTTCAACATTCTTGCTTGGATCTGCTTTCAAGCTCACTTTCCCATATAATTGGAATTGGAAAACATCATTGTTGCTTGGGGGACTTCTGAGTGCCACAGATCCTGTGGCTGTAGTAGCTCTAATGAAAGAGCTAGGAGCAAGTAAAAAACTGAATACGATAATAGAAGGAGAATCCTTGATGAATGATGGGACAGCAATTGTGGTTTATCAACTTTTTTATCAAATGGTCCTTGGAAAGAGCTTTAACTGGGGAGCTATAATCAAATATCTTACACAAGTCTCGCTGGGGGCTTTGGGAATTGGTCTTGCATTTGGGATTGCATCTGTTTTATGGCTCGGGTTCATTTTCAACGACACAGTGATAGAGATTGCATTAACACTTGCTGTGAGCTATATTGCTTATTTCACTGCTCAAGAGGGAGTTGATGTTTCTGGTGTTTTGGCGGTGATGACATTAGGAATGTTTCATGCTGCAGTTGCAAGAACAGCTTTTAAGGGCGATGGTCAACAAAGCTTACATCATTTTTGGGAAATGGTTGCATACATAGCGAATACATTAATTTTCATATTGAGTGGAGTTGTTATAGCTGAAGGAGTTCTTGGAAGCGAAGGAATTCTTAATGATGGAGCATCATGGGGCTTCCTCATTCTGCTTTATGCATATGTGCAAGCATCTCGAGTAATAGTTGTTGGAGTACTGTATCCATTTCTGCGGTATTTTGGATATGGATTGGATTGGAAAGAAGCCACAATACTGACGTGGTCAGGTCTGCGTGGAGCTGTTGCTCTGGCACTTTCATTGTCAGTGAAGCGATCAAGTGACCAGTCATTGTACATCAGTTCAGAAACTGGAACTCTGTTTGTTTTTTTCACGGGTGGAATCGTATTCATGACACTTATTGTAAATGGTTCGACCACACAATTCATTTTACATCTTCTACATATGGACAAGCTCTCCGTGGCTAAGAAACGCATATTGGATTATACAAAATATGAGATGTTGAACAAAGCATTGGATGCCTTTGGAGATCTTGGAGATGATGAGGAACTGGGACCTGCAGACTGGCCTACAGTGAAAAGACATATCACAAGTCTCAGTCATGTGGAGGGGGAACCGCTGCACCCCCACAATGCATTTGAAAGTGATCAAAACGTTGACTCGATGAATTTGAGAGACATTCGTATGCGACTTTTGAACGGTGTTCAAGCTGCTTACTGGGGGATGCTTGACGAGGGAAGGATAACACAAACTACTGCAAATATCTTGATGCAATCTGTGGATGAAGCCCTTGATCTGGTTGCAAATGAGCCTTTATGTGATTGGAAAGATTTAAAAGCTAATGTACATTTTCCAAATTATTACAGGTTCCTTCAGACAAGCATTTTCCCTCAGAAGTTGGTTACATACTTCACTGTGGAAAGATTGGAATCTGGATGTTATATTTGTGCTGCATTTCTCCGTGCACATAGAATTGCAAGACAACAGCTTCATGAGTTTATAGGCGATAGCGATATTGCTTCTACTGTTATTAATGAAAGTGAGGCTGAAGGTGAAGAAGCACGAAAATTTCTGGAAGATGTTCGTGAGACATTTCCTCAGGTTTTGCGTGTTGTTAAAACCAGACAAGTAACATATTCAGTGCTCAACCATTTACTTGAATATGTCCAAAATCTAGAGAAGGTTGGCCTACTAGAAGAGAAAGAGATGTTGCATCTTCATGGTGCTGTCCAGGCTGACTTGAAAAGGCTTCTAAGAAATCCACCTCTGGTAAAGGTTCCAAAAATGCGCAACTTAATGAGTGTCCATCCATTTCTTGGGGCACTTCCTCCTTTAGTACGTGAATCACTTGAAGTTTCAACGAAAGAAGTTATGAAACTACGGGGTGCGACACTTTACAAGGAAGGTTCAAAGCCTAGTGGTGTTTGGCTTATATCCAACGGAGTGGTCAAGTGGGAAAGTAGGAGCATGAGAAACAGGTTCTCCCTGCACCCCACATTTACTCATGGATGTACTTTGGGCCTATATGAATTGCTTACTGAGAAGCCATGCTTGTGTGACATGATAGCAGATTCTGTTGTTTTCTCTTTTTTTATTGAACACGACAAGTTTCTTTCGGTACTTAGATCAGATCCTTCAATTGAAGACTTCTTGTGGCAGGAAAGTTCCATTGTTCTTGCCAAACTTTTGCTTCCACAAGTATTTGAGAGAATAGAAATGAGAGATCTGAGAGTTCTTGTTGTTGAAGGGTCAGTAATGACAATGTATATACAAGGAGAAACAATAGAAATTCCACGCCATTCTATTGGCTTTCTATTGGAAGGATTTATCAAAAGTCCTGGCATCCAGGAGGGACTGATAGCATCACCCGCTGTGTTGTTCTCTTCGCATGGGAACCAGAGCTTCCACAGTATGGAAAACTCAGGTACGAATGGTTCTAGTTTTTCTCATCAAGGCTCCTCTTATGAAGTTACAACAAGATCAAGAGTAATCATTTTTGACATGGCTGCCCTTCAATCAAATAACATTCTAAATCAGTCATCATCTTCTGCCGATCACCTTCAAAGATCACCGAGCAGAGATCACTCTGGTCTTATGAGTTGGCCTCAACTATTGTCCGCTCCAAGACCACCACAGAAGCAGAAATCTGAAAAAACTGAGCGTCCAGCTGAGAGCTTGTCTGCAAAGGCAATGCAGCTAAGCATATACGGCAGCATGGTTGATACTCGTCAGCGAACTAAGAGTTTTCCAAGCAACATTGTTGAACCATCCCTTAGCCGGTCAAATCCTTCGATGGCTTCGTATAGATGTGCTCCCCTTCCATATGTAAAATCAGAAGGAGCTGCTACAATGAGAAATAGGCTAGATGCAAGAAAGCTACCAACAAGCGCTGCTCGGCCACCACAAGAAAAATCAGCTCAAAATGAGACTAATACAAGGGATGATTCAAGTGAGGAATCAGGTGCTGAGGATGATGGTGTCATAGTGAGAATTGATTCACCCAGTGTACTTTCATTTCACCAGGTTCCATGA 3429 41.97 MAEVELLEMFTNRELEEGAIGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIILGSIEYGTHHRLGKIGDGIRLWGTIDPDLLLAVFLPALLFESSFSMEVHQIKRCLAQMILLAGPGVLISTFLLGSAFKLTFPYNWNWKTSLLLGGLLSATDPVAVVALMKELGASKKLNTIIEGESLMNDGTAIVVYQLFYQMVLGKSFNWGAIIKYLTQVSLGALGIGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAYFTAQEGVDVSGVLAVMTLGMFHAAVARTAFKGDGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLGSEGILNDGASWGFLILLYAYVQASRVIVVGVLYPFLRYFGYGLDWKEATILTWSGLRGAVALALSLSVKRSSDQSLYISSETGTLFVFFTGGIVFMTLIVNGSTTQFILHLLHMDKLSVAKKRILDYTKYEMLNKALDAFGDLGDDEELGPADWPTVKRHITSLSHVEGEPLHPHNAFESDQNVDSMNLRDIRMRLLNGVQAAYWGMLDEGRITQTTANILMQSVDEALDLVANEPLCDWKDLKANVHFPNYYRFLQTSIFPQKLVTYFTVERLESGCYICAAFLRAHRIARQQLHEFIGDSDIASTVINESEAEGEEARKFLEDVRETFPQVLRVVKTRQVTYSVLNHLLEYVQNLEKVGLLEEKEMLHLHGAVQADLKRLLRNPPLVKVPKMRNLMSVHPFLGALPPLVRESLEVSTKEVMKLRGATLYKEGSKPSGVWLISNGVVKWESRSMRNRFSLHPTFTHGCTLGLYELLTEKPCLCDMIADSVVFSFFIEHDKFLSVLRSDPSIEDFLWQESSIVLAKLLLPQVFERIEMRDLRVLVVEGSVMTMYIQGETIEIPRHSIGFLLEGFIKSPGIQEGLIASPAVLFSSHGNQSFHSMENSGTNGSSFSHQGSSYEVTTRSRVIIFDMAALQSNNILNQSSSSADHLQRSPSRDHSGLMSWPQLLSAPRPPQKQKSEKTERPAESLSAKAMQLSIYGSMVDTRQRTKSFPSNIVEPSLSRSNPSMASYRCAPLPYVKSEGAATMRNRLDARKLPTSAARPPQEKSAQNETNTRDDSSEESGAEDDGVIVRIDSPSVLSFHQVP 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15081201 15127514 + CmaCh04G021540.1 Cma04g02154 293235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02154 1142 MobiDBLite consensus disorder prediction 1046 1065 - -
Cma04g02154 1142 Gene3D - 151 203 - -
Cma04g02154 1142 CDD CAP_ED 737 846 IPR000595 -
Cma04g02154 1142 ProSiteProfiles cAMP/cGMP binding motif profile. 737 840 IPR000595 -
Cma04g02154 1142 MobiDBLite consensus disorder prediction 980 998 - -
Cma04g02154 1142 Gene3D Jelly Rolls 708 863 IPR014710 -
Cma04g02154 1142 Pfam Sodium/hydrogen exchanger family 32 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma04g02154 1142 PANTHER SODIUM/HYDROGEN EXCHANGER 25 972 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cma04g02154 1142 MobiDBLite consensus disorder prediction 1085 1142 - -
Cma04g02154 1142 MobiDBLite consensus disorder prediction 980 1028 - -
Cma04g02154 1142 PANTHER - 25 972 - -
Cma04g02154 1142 SUPERFAMILY cAMP-binding domain-like 726 851 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02154 Cma-Chr4:15081201 Cma13g00324 Cma-Chr13:3743086 1.61E-09 dispersed
Cma04g02154 Cma-Chr4:15081201 Cma18g00624 Cma-Chr18:5526159 1.43E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02154 - - bhj:120067857 1987.62