Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02156 ATGGCCTCCTTTTCCTCTGTTTCAAAACCACCTCTGATTGTAGCGGTGTTTGTAATTCTGGTGGCTTCCGAGGGTTTCATTGCCCGAGCTAGGGCGGCAGGAGAGTGCGGGAAGACACCGGTAGAGTCCGCGGCGTTGGGGCTGACGCCGTGCCTGGCGGCTACCAGGGATGCCAGAGCTAAGGTTTCGCCGGCTTGCTGTAGCAGAGTGGCGGCGATGTTTAATACTTCCCCGAAATGCTTGTGCGCTATTCTGCTTTCGCCGGTGAGTAAGCAGGCCGGAATTAATCCGGCCATTGCTATTACCATCCCCAAACGCTGCAACATCAGAAACCGTCCCGCCGGCAAGAAATGTGGAAGTAAGCTCAGAGCTATTCTTTCCTTTTTATTAAGTACACTCTCCCTTGAGACAGCAGCCCACACCCACTCTGAGAGATGTTATAATGTTATGTTATAA 456 52.41 MASFSSVSKPPLIVAVFVILVASEGFIARARAAGECGKTPVESAALGLTPCLAATRDARAKVSPACCSRVAAMFNTSPKCLCAILLSPVSKQAGINPAIAITIPKRCNIRNRPAGKKCGSKLRAILSFLLSTLSLETAAHTHSERCYNVML 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15136067 15136857 - CmaCh04G021560.1 Cma04g02156 293237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02156 151 Gene3D - 42 115 IPR036312 -
Cma04g02156 151 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 4.1 9 121 - -
Cma04g02156 151 PANTHER LIPID BINDING PROTEIN-RELATED 9 121 IPR039265 GO:0005504|GO:0009627
Cma04g02156 151 CDD AAI_LTSS 48 109 - -
Cma04g02156 151 Pfam Probable lipid transfer 23 118 IPR016140 -
Cma04g02156 151 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 44 113 IPR036312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02156 - - - mcha:111015552 182.185
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02156 Cma-Chr4:15136067 Cma10g00983 Cma-Chr10:5102718 2.24E-06 dispersed
Cma04g02156 Cma-Chr4:15136067 Cma04g02934 Cma-Chr4:19353780 3.57E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g571 . . . . . . . . . . . . . . . . Cpe01g01869 . . . . . . . . . . . . . . . . . Cone9ag0366 . . . . . . . . . . . . . Cmo04g02253 . Cma04g02156 . Car04g02091 . . . . . . . . . . Cla01g00672 Cam01g0704 Cec01g0698 Cco01g0725 Clacu01g0692 Cmu01g0667 Cre09g1840 . Csa05g01305 Chy09g00460 Cme09g01268
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013659 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 0 3 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02156 Cma_Chr04 FPKM 125.28125 140.471359 808.026062 834.675537 16.729418 11.795793 15.707069 0.0 0.270163 0.0