Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02158 ATGGTGCTCTCCAAAACTTTCTCAGAATCGGATGTCTCTGTTCATTCCACCTTTGCCTCTCGCTATGTGCGGGACTCTGCTCCAAGATTCACCATGCCCGAAAACTCCATGCCCAAGGAGGCTGCTTTTCAGATCATCAACGACGAGCTCATGCTCGATGGCAACCCCAGGCTCAATTTGGCTTCCTTCGTCACCACTTGGATGGAGCCCGAGTGCGATAAGCTGATTATGGACTCTGTCAACAAGAACTACGTCGATATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGATGTGTCAACATGATTGCCCATCTCTTCAACGCTCCCTTGGGAGACTCCGACACGGCGGTCGGAGTTGGCACGGTGGGATCCTCGGAGGCCATCATGTTGGCGGGACTGGCCTTCAAGAGGAAGTGGCAGAACAAGCGGAAAGCAGAGGGGAAGCCTTATGATAAACCGAACATCGTGACAGGGGCGAATGTTCAAGTTTGTTGGGAGAAATTCGCGAGGTACTTTGAAGTGGAGCTGAAGGAAGTGAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTCAAGGCGGTGGAGATGGTGGATGAGAACACCATTTGCGTCGCCGCCATTTTGGGGTCGACTTACAATGGGGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAACAGGAAAACAGGGTGGGATACTCCCATTCACGTGGATGCTGCGAGTGGCGGATTCATAGCGCCGTTTTTGTATCCAGACCTCGAATGGGACTTCCGGCTTCCGTTGGTGAAGAGTATCAATGTGAGTGGGCACAAGTATGGGCTTGTCTACGCCGGAATTGGATGGGTCATTTGGAGAACCAAAGAGGATTTGCCTGAAGAGCTGATTTTCCACATAAATTACCTCGGAGCGGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAAATCATCGCTCAGTATTACCAACTAATCCGCTTGGGTTTCGAGGGGTACCAGAACGTGATGCAGAATTGTCACGACAACGCAATGGTGCTGAAGGAAGGGCTGGAAAACACAGGAAGGTTCAGCATAGCGTCGAAGGACATGGGGGTGCCGGTGGTGGCGTTCTCTCTGAAAGACAGAAGCCGGCACGACGAATTCGAGGTGTCGGAAATGCTGCGACGGTTCGGGTGGATCGTGCCGGCATACCCAATGCCAGAGGGGGCGAAACATGTGTCGGTTCTTCGCGTGGTGATCAGAGAAGACTTCTCGCGCACGCTTGCAGAGAGGCTGGTGCTTGATATCGTGAAAGTGTTAGCCGAGCTTGATACTCTGCCACCCAAGAACAGTGGAAAATCGACAAGCTTAGAAGACGGCAAAAAAGAGAAGGCAGAGGAAGCAGGGAGGGAAATAGCGAGTTATTGGAGGAATATAACCAAGGCTAGGAAGATGAAGCTTGCTGAGACTCAAGCTGGTCCTTCAGTAACAGTCATTGCCAAATAA 1509 51.42 MVLSKTFSESDVSVHSTFASRYVRDSAPRFTMPENSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNRKTGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYQNVMQNCHDNAMVLKEGLENTGRFSIASKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNSGKSTSLEDGKKEKAEEAGREIASYWRNITKARKMKLAETQAGPSVTVIAK 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15139593 15141658 - CmaCh04G021580.1 Cma04g02158 293239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02158 502 Gene3D - 1 65 - -
Cma04g02158 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cma04g02158 502 CDD DOPA_deC_like 59 439 - -
Cma04g02158 502 Gene3D - 361 448 - -
Cma04g02158 502 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cma04g02158 502 MobiDBLite consensus disorder prediction 449 470 - -
Cma04g02158 502 MobiDBLite consensus disorder prediction 456 470 - -
Cma04g02158 502 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma04g02158 502 Gene3D - 66 360 IPR015421 GO:0003824
Cma04g02158 502 PANTHER GLUTAMATE DECARBOXYLASE 1 486 - -
Cma04g02158 502 PANTHER GLUTAMATE DECARBOXYLASE 1 486 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02158 Cma15g00874 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02158 Cma-Chr4:15139593 Cma04g02275 Cma-Chr4:15881579 0 dispersed
Cma04g02158 Cma-Chr4:15139593 Cma04g02159 Cma-Chr4:15145154 0 tandem
Cma15g00872 Cma-Chr15:4415249 Cma04g02158 Cma-Chr4:15139593 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02158 K01580 - csv:101208026 954.125